3HRDB

Crystal structure of nicotinate dehydrogenase
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
330
structure length
330
Chain Sequence
MKKRGKGVGSMWYGIGNTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAAGRMAVGAGSYNPNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQGFVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDVPEIHSILVESEGGPGPFGAKGVGEPALIPMIPAVVAAIEDALGTRFTHTPIMPKDIVAAVKAQEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Mo-Se active site of nicotinate dehydrogenase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Nicotinate dehydrogenase large molybdopterin subunit
total genus 92
structure length 330
sequence length 330
chains with identical sequence F
ec nomenclature ec 1.17.1.5: Nicotinate dehydrogenase.
pdb deposition date 2009-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB01
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB02
3NRZC 4USAA 1FIQC 4C7YA 1WYGA 3HRDB 1FO4A 3FC4A 2W3RB 3NS1C 2W3SB 1VDVA 4US9A 1ZXIB 1SIJA 1DGJA 2W54B 3ETRC 2E3TA 1SB3A 4ZOHA 1N5WB 2W55B 3NVZC 3AM9A 1VLBA 3SR6C 1N63B 3AN1A 1N5XA 3NVYC 1N60B 1V97A 3FAHA 3HRDA 3NVVC 1FFVB 4C7ZA 3B9JC 1JRPB 1JROB 3AMZA 1FFUB 1RM6A 3NVWC 1N62B 3EUB4 1N61B 4US8A 4C80A 3L4PA
chains in the Genus database with same CATH superfamily
3NRZC 4USAA 1FIQC 4C7YA 1WYGA 3HRDB 1FO4A 3FC4A 2W3RB 3NS1C 2W3SB 1VDVA 4US9A 1ZXIB 1SIJA 1DGJA 2W54B 3ETRC 2E3TA 1SB3A 4ZOHA 1N5WB 2W55B 3NVZC 3AM9A 1VLBA 3SR6C 1N63B 3AN1A 1N5XA 3NVYC 1N60B 1V97A 3FAHA 3HRDA 3NVVC 1FFVB 4C7ZA 3B9JC 1JRPB 1JROB 3AMZA 1FFUB 1RM6A 3NVWC 1N62B 3EUB4 1N61B 1T3QB 4US8A 4C80A 3L4PA
chains in the Genus database with same CATH topology
3NRZC 4USAA 1FIQC 4C7YA 1WYGA 3HRDB 1FO4A 3FC4A 2W3RB 3NS1C 2W3SB 1VDVA 4US9A 1ZXIB 1SIJA 1DGJA 2W54B 3ETRC 2E3TA 1SB3A 4ZOHA 1N5WB 2W55B 3NVZC 3AM9A 1VLBA 3SR6C 1N63B 3AN1A 1N5XA 3NVYC 1N60B 1V97A 3FAHA 3HRDA 3NVVC 1FFVB 4C7ZA 3B9JC 1JRPB 1JROB 3AMZA 1FFUB 1RM6A 3NVWC 1N62B 3EUB4 1N61B 4US8A 4C80A 3L4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NRZ C;  4USA A;  1FIQ C;  4C7Y A;  1WYG A;  3HRD B;  1FO4 A;  3FC4 A;  2W3R B;  3NS1 C;  2W3S B;  1VDV A;  4US9 A;  1ZXI B;  1SIJ A;  1DGJ A;  2W54 B;  3ETR C;  2E3T A;  1SB3 A;  4ZOH A;  1N5W B;  2W55 B;  3NVZ C;  3AM9 A;  1VLB A;  3SR6 C;  1N63 B;  3AN1 A;  1N5X A;  3NVY C;  1N60 B;  1V97 A;  3FAH A;  3HRD A;  3NVV C;  1FFV B;  4C7Z A;  3B9J C;  1JRP B;  1JRO B;  3AMZ A;  1FFU B;  1RM6 A;  3NVW C;  1N62 B;  3EUB 4;  1N61 B;  4US8 A;  4C80 A;  3L4P A; 
#chains in the Genus database with same CATH topology
 3NRZ C;  4USA A;  1FIQ C;  4C7Y A;  1WYG A;  3HRD B;  1FO4 A;  3FC4 A;  2W3R B;  3NS1 C;  2W3S B;  1VDV A;  4US9 A;  1ZXI B;  1SIJ A;  1DGJ A;  2W54 B;  3ETR C;  2E3T A;  1SB3 A;  4ZOH A;  1N5W B;  2W55 B;  3NVZ C;  3AM9 A;  1VLB A;  3SR6 C;  1N63 B;  3AN1 A;  1N5X A;  3NVY C;  1N60 B;  1V97 A;  3FAH A;  3HRD A;  3NVV C;  1FFV B;  4C7Z A;  3B9J C;  1JRP B;  1JRO B;  3AMZ A;  1FFU B;  1RM6 A;  3NVW C;  1N62 B;  3EUB 4;  1N61 B;  1T3Q B;  4US8 A;  4C80 A;  3L4P A; 
#chains in the Genus database with same CATH homology
 3NRZ C;  4USA A;  1FIQ C;  4C7Y A;  1WYG A;  3HRD B;  1FO4 A;  3FC4 A;  2W3R B;  3NS1 C;  2W3S B;  1VDV A;  4US9 A;  1ZXI B;  1SIJ A;  1DGJ A;  2W54 B;  3ETR C;  2E3T A;  1SB3 A;  4ZOH A;  1N5W B;  2W55 B;  3NVZ C;  3AM9 A;  1VLB A;  3SR6 C;  1N63 B;  3AN1 A;  1N5X A;  3NVY C;  1N60 B;  1V97 A;  3FAH A;  3HRD A;  3NVV C;  1FFV B;  4C7Z A;  3B9J C;  1JRP B;  1JRO B;  3AMZ A;  1FFU B;  1RM6 A;  3NVW C;  1N62 B;  3EUB 4;  1N61 B;  4US8 A;  4C80 A;  3L4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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