3HRDB

Crystal structure of nicotinate dehydrogenase
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
330
structure length
330
Chain Sequence
MKKRGKGVGSMWYGIGNTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAAGRMAVGAGSYNPNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQGFVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDVPEIHSILVESEGGPGPFGAKGVGEPALIPMIPAVVAAIEDALGTRFTHTPIMPKDIVAAVKAQEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Mo-Se active site of nicotinate dehydrogenase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Nicotinate dehydrogenase large molybdopterin subunit
total genus 92
structure length 330
sequence length 330
chains with identical sequence F
ec nomenclature ec 1.17.1.5: Nicotinate dehydrogenase.
pdb deposition date 2009-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB01
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB02
1N61B 1FFUB 1SIJA 3HRDB 3L4PA 1FO4A 4C7ZA 1VDVA 2W3RB 2W55B 1N63B 3HRDA 3FC4A 3EUB4 1FFVB 3AM9A 3AN1A 1JRPB 3NVZC 1N62B 3NVVC 3SR6C 2W54B 1N60B 4C7YA 4US8A 1FIQC 3B9JC 3NS1C 3FAHA 3NVWC 2E3TA 1V97A 1DGJA 3NRZC 4US9A 4ZOHA 3AMZA 1ZXIB 3ETRC 1RM6A 4C80A 1N5WB 1N5XA 2W3SB 4USAA 1SB3A 3NVYC 1VLBA 1WYGA 1JROB
chains in the Genus database with same CATH superfamily
1N61B 1FFUB 1SIJA 3HRDB 3L4PA 1FO4A 4C7ZA 1VDVA 2W3RB 2W55B 1N63B 3HRDA 3FC4A 3EUB4 1FFVB 3AM9A 3AN1A 1JRPB 3NVZC 1N62B 3NVVC 3SR6C 2W54B 1N60B 4C7YA 4US8A 1FIQC 3B9JC 3NS1C 3FAHA 3NVWC 2E3TA 1V97A 1DGJA 3NRZC 4US9A 4ZOHA 3AMZA 1ZXIB 3ETRC 1T3QB 1RM6A 4C80A 1N5WB 1N5XA 2W3SB 4USAA 1SB3A 3NVYC 1VLBA 1WYGA 1JROB
chains in the Genus database with same CATH topology
1N61B 1FFUB 1SIJA 3HRDB 3L4PA 1FO4A 4C7ZA 1VDVA 2W3RB 2W55B 1N63B 3HRDA 3FC4A 3EUB4 1FFVB 3AM9A 3AN1A 1JRPB 3NVZC 1N62B 3NVVC 3SR6C 2W54B 1N60B 4C7YA 4US8A 1FIQC 3B9JC 3NS1C 3FAHA 3NVWC 2E3TA 1V97A 1DGJA 3NRZC 4US9A 4ZOHA 3AMZA 1ZXIB 3ETRC 1RM6A 4C80A 1N5WB 1N5XA 2W3SB 4USAA 1SB3A 3NVYC 1VLBA 1WYGA 1JROB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N61 B;  1FFU B;  1SIJ A;  3HRD B;  3L4P A;  1FO4 A;  4C7Z A;  1VDV A;  2W3R B;  2W55 B;  1N63 B;  3HRD A;  3FC4 A;  3EUB 4;  1FFV B;  3AM9 A;  3AN1 A;  1JRP B;  3NVZ C;  1N62 B;  3NVV C;  3SR6 C;  2W54 B;  1N60 B;  4C7Y A;  4US8 A;  1FIQ C;  3B9J C;  3NS1 C;  3FAH A;  3NVW C;  2E3T A;  1V97 A;  1DGJ A;  3NRZ C;  4US9 A;  4ZOH A;  3AMZ A;  1ZXI B;  3ETR C;  1RM6 A;  4C80 A;  1N5W B;  1N5X A;  2W3S B;  4USA A;  1SB3 A;  3NVY C;  1VLB A;  1WYG A;  1JRO B; 
#chains in the Genus database with same CATH topology
 1N61 B;  1FFU B;  1SIJ A;  3HRD B;  3L4P A;  1FO4 A;  4C7Z A;  1VDV A;  2W3R B;  2W55 B;  1N63 B;  3HRD A;  3FC4 A;  3EUB 4;  1FFV B;  3AM9 A;  3AN1 A;  1JRP B;  3NVZ C;  1N62 B;  3NVV C;  3SR6 C;  2W54 B;  1N60 B;  4C7Y A;  4US8 A;  1FIQ C;  3B9J C;  3NS1 C;  3FAH A;  3NVW C;  2E3T A;  1V97 A;  1DGJ A;  3NRZ C;  4US9 A;  4ZOH A;  3AMZ A;  1ZXI B;  3ETR C;  1T3Q B;  1RM6 A;  4C80 A;  1N5W B;  1N5X A;  2W3S B;  4USA A;  1SB3 A;  3NVY C;  1VLB A;  1WYG A;  1JRO B; 
#chains in the Genus database with same CATH homology
 1N61 B;  1FFU B;  1SIJ A;  3HRD B;  3L4P A;  1FO4 A;  4C7Z A;  1VDV A;  2W3R B;  2W55 B;  1N63 B;  3HRD A;  3FC4 A;  3EUB 4;  1FFV B;  3AM9 A;  3AN1 A;  1JRP B;  3NVZ C;  1N62 B;  3NVV C;  3SR6 C;  2W54 B;  1N60 B;  4C7Y A;  4US8 A;  1FIQ C;  3B9J C;  3NS1 C;  3FAH A;  3NVW C;  2E3T A;  1V97 A;  1DGJ A;  3NRZ C;  4US9 A;  4ZOH A;  3AMZ A;  1ZXI B;  3ETR C;  1RM6 A;  4C80 A;  1N5W B;  1N5X A;  2W3S B;  4USA A;  1SB3 A;  3NVY C;  1VLB A;  1WYG A;  1JRO B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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