3HRDB

Crystal structure of nicotinate dehydrogenase
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
330
structure length
330
Chain Sequence
MKKRGKGVGSMWYGIGNTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAAGRMAVGAGSYNPNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQGFVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDVPEIHSILVESEGGPGPFGAKGVGEPALIPMIPAVVAAIEDALGTRFTHTPIMPKDIVAAVKAQEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Mo-Se active site of nicotinate dehydrogenase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Nicotinate dehydrogenase large molybdopterin subunit
total genus 92
structure length 330
sequence length 330
chains with identical sequence F
ec nomenclature ec 1.17.1.5: Nicotinate dehydrogenase.
pdb deposition date 2009-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB01
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 3hrdB02
1RM6A 4US9A 3FAHA 3NVYC 4ZOHA 1N63B 3NVWC 2W3RB 3HRDA 4C7YA 1N62B 1DGJA 1N5WB 3EUB4 1N5XA 4C7ZA 1N60B 2W55B 1FFUB 1SIJA 3ETRC 1FFVB 3NRZC 2W54B 3NVVC 1FO4A 1V97A 1VDVA 1JROB 4C80A 1FIQC 3L4PA 1WYGA 1N61B 3AN1A 3B9JC 3SR6C 3NVZC 3AMZA 4USAA 2W3SB 1ZXIB 3HRDB 1JRPB 3NS1C 1SB3A 4US8A 3FC4A 2E3TA 1VLBA 3AM9A
chains in the Genus database with same CATH superfamily
1RM6A 4US9A 3FAHA 3NVYC 4ZOHA 1N63B 3NVWC 2W3RB 3HRDA 4C7YA 1N62B 1T3QB 1DGJA 1N5WB 3EUB4 1N5XA 4C7ZA 1N60B 2W55B 1FFUB 1SIJA 3ETRC 1FFVB 3NRZC 2W54B 3NVVC 1FO4A 1V97A 1VDVA 1JROB 4C80A 1FIQC 3L4PA 1WYGA 1N61B 3AN1A 3B9JC 3SR6C 3NVZC 3AMZA 4USAA 2W3SB 1ZXIB 3HRDB 1JRPB 3NS1C 1SB3A 4US8A 3FC4A 2E3TA 1VLBA 3AM9A
chains in the Genus database with same CATH topology
1RM6A 4US9A 3FAHA 3NVYC 4ZOHA 1N63B 3NVWC 2W3RB 3HRDA 4C7YA 1N62B 1DGJA 1N5WB 3EUB4 1N5XA 4C7ZA 1N60B 2W55B 1FFUB 1SIJA 3ETRC 1FFVB 3NRZC 2W54B 3NVVC 1FO4A 1V97A 1VDVA 1JROB 4C80A 1FIQC 3L4PA 1WYGA 1N61B 3AN1A 3B9JC 3SR6C 3NVZC 3AMZA 4USAA 2W3SB 1ZXIB 3HRDB 1JRPB 3NS1C 1SB3A 4US8A 3FC4A 2E3TA 1VLBA 3AM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RM6 A;  4US9 A;  3FAH A;  3NVY C;  4ZOH A;  1N63 B;  3NVW C;  2W3R B;  3HRD A;  4C7Y A;  1N62 B;  1DGJ A;  1N5W B;  3EUB 4;  1N5X A;  4C7Z A;  1N60 B;  2W55 B;  1FFU B;  1SIJ A;  3ETR C;  1FFV B;  3NRZ C;  2W54 B;  3NVV C;  1FO4 A;  1V97 A;  1VDV A;  1JRO B;  4C80 A;  1FIQ C;  3L4P A;  1WYG A;  1N61 B;  3AN1 A;  3B9J C;  3SR6 C;  3NVZ C;  3AMZ A;  4USA A;  2W3S B;  1ZXI B;  3HRD B;  1JRP B;  3NS1 C;  1SB3 A;  4US8 A;  3FC4 A;  2E3T A;  1VLB A;  3AM9 A; 
#chains in the Genus database with same CATH topology
 1RM6 A;  4US9 A;  3FAH A;  3NVY C;  4ZOH A;  1N63 B;  3NVW C;  2W3R B;  3HRD A;  4C7Y A;  1N62 B;  1T3Q B;  1DGJ A;  1N5W B;  3EUB 4;  1N5X A;  4C7Z A;  1N60 B;  2W55 B;  1FFU B;  1SIJ A;  3ETR C;  1FFV B;  3NRZ C;  2W54 B;  3NVV C;  1FO4 A;  1V97 A;  1VDV A;  1JRO B;  4C80 A;  1FIQ C;  3L4P A;  1WYG A;  1N61 B;  3AN1 A;  3B9J C;  3SR6 C;  3NVZ C;  3AMZ A;  4USA A;  2W3S B;  1ZXI B;  3HRD B;  1JRP B;  3NS1 C;  1SB3 A;  4US8 A;  3FC4 A;  2E3T A;  1VLB A;  3AM9 A; 
#chains in the Genus database with same CATH homology
 1RM6 A;  4US9 A;  3FAH A;  3NVY C;  4ZOH A;  1N63 B;  3NVW C;  2W3R B;  3HRD A;  4C7Y A;  1N62 B;  1DGJ A;  1N5W B;  3EUB 4;  1N5X A;  4C7Z A;  1N60 B;  2W55 B;  1FFU B;  1SIJ A;  3ETR C;  1FFV B;  3NRZ C;  2W54 B;  3NVV C;  1FO4 A;  1V97 A;  1VDV A;  1JRO B;  4C80 A;  1FIQ C;  3L4P A;  1WYG A;  1N61 B;  3AN1 A;  3B9J C;  3SR6 C;  3NVZ C;  3AMZ A;  4USA A;  2W3S B;  1ZXI B;  3HRD B;  1JRP B;  3NS1 C;  1SB3 A;  4US8 A;  3FC4 A;  2E3T A;  1VLB A;  3AM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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