3IFJ | Genus

Total Genus 30

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	138
structure length	138
Chain Sequence	CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTYDLEVEELHTLVAEGVVVH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 138 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Splicing
source organism	Mycobacterium tuberculosis
publication title	Selection and structure of hyperactive inteins: peripheral changes relayed to the catalytic center. pubmed doi rcsb
molecule keywords	Endonuclease PI-MtuI
total genus	30
structure length	138
sequence length	138
chains with identical sequence	B
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2009-07-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14890	Intein_splicing	Intein splicing domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	3ifjA00

2IN8A 2JMZA 1ZD7A 5I0AA 2IN9A 3IFJA 1DQ3A 2IN0A 4E2TA 1EF0A 2LQMA 2CW7A 4OZ6A 1AT0A 3NZMA 2CW8A 1VDEA 4O1SA 2KEQA 1LWSA 4E2UA 1ZDEA 1DFAA 4GIGA 5K08A 4KL6A 1AM2A 1LWTA 4KL5A 1GPPA 2LWYA 1MI8A 2IMZA 3IGDA 2JNQA 1JVAA 1UM2A 2LCJA 2L8LA 4O1RA
chains in the Genus database with same CATH superfamily

2IN8A 2JMZA 1ZD7A 5I0AA 2IN9A 3IFJA 1DQ3A 2IN0A 4E2TA 1EF0A 2LQMA 2CW7A 4OZ6A 1AT0A 4LX3A 3NZMA 2CW8A 1VDEA 4O1SA 2KEQA 1LWSA 4E2UA 1ZDEA 1DFAA 4GIGA 5K08A 4KL6A 1AM2A 1LWTA 4KL5A 1GPPA 2LWYA 1MI8A 4QFQA 2IMZA 3IGDA 2JNQA 1JVAA 1UM2A 2LCJA 2L8LA 4O1RA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A; 
#chains in the Genus database with same CATH topology
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  4LX3 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  4QFQ A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A; 
#chains in the Genus database with same CATH homology
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3IFJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations