3IFJA

Crystal structure of mtu reca intein, splicing domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
138
structure length
138
Chain Sequence
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTYDLEVEELHTLVAEGVVVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Selection and structure of hyperactive inteins: peripheral changes relayed to the catalytic center.
pubmed doi rcsb
molecule tags Splicing
source organism Mycobacterium tuberculosis
molecule keywords Endonuclease PI-MtuI
total genus 30
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2009-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 3ifjA00
1GPPA 4E2TA 4KL6A 5K08A 4E2UA 3NZMA 4GIGA 1AM2A 4O1SA 2IN0A 1LWSA 4KL5A 1UM2A 2JNQA 1ZDEA 4OZ6A 2CW7A 2IMZA 2CW8A 1LWTA 2L8LA 3IFJA 1DQ3A 1EF0A 1ZD7A 5I0AA 2IN8A 2IN9A 1MI8A 2LQMA 3IGDA 1AT0A 2KEQA 1VDEA 1DFAA 2LCJA 2LWYA 1JVAA 4O1RA 2JMZA
chains in the Genus database with same CATH superfamily
1GPPA 4E2TA 4KL6A 5K08A 4E2UA 3NZMA 4GIGA 1AM2A 4O1SA 2IN0A 1LWSA 4KL5A 1UM2A 2JNQA 1ZDEA 4OZ6A 4QFQA 2CW7A 2IMZA 2CW8A 1LWTA 2L8LA 3IFJA 1DQ3A 1EF0A 1ZD7A 5I0AA 2IN8A 2IN9A 1MI8A 2LQMA 3IGDA 4LX3A 1AT0A 2KEQA 1VDEA 1DFAA 2LCJA 2LWYA 1JVAA 4O1RA 2JMZA
chains in the Genus database with same CATH topology
1GPPA 4E2TA 4KL6A 5K08A 4E2UA 3NZMA 4GIGA 1AM2A 4O1SA 2IN0A 1LWSA 4KL5A 1UM2A 2JNQA 1ZDEA 4OZ6A 2CW7A 2IMZA 2CW8A 1LWTA 2L8LA 3IFJA 1DQ3A 1EF0A 1ZD7A 5I0AA 2IN8A 2IN9A 1MI8A 2LQMA 3IGDA 1AT0A 2KEQA 1VDEA 1DFAA 2LCJA 2LWYA 1JVAA 4O1RA 2JMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPP A;  4E2T A;  4KL6 A;  5K08 A;  4E2U A;  3NZM A;  4GIG A;  1AM2 A;  4O1S A;  2IN0 A;  1LWS A;  4KL5 A;  1UM2 A;  2JNQ A;  1ZDE A;  4OZ6 A;  2CW7 A;  2IMZ A;  2CW8 A;  1LWT A;  2L8L A;  3IFJ A;  1DQ3 A;  1EF0 A;  1ZD7 A;  5I0A A;  2IN8 A;  2IN9 A;  1MI8 A;  2LQM A;  3IGD A;  1AT0 A;  2KEQ A;  1VDE A;  1DFA A;  2LCJ A;  2LWY A;  1JVA A;  4O1R A;  2JMZ A; 
#chains in the Genus database with same CATH topology
 1GPP A;  4E2T A;  4KL6 A;  5K08 A;  4E2U A;  3NZM A;  4GIG A;  1AM2 A;  4O1S A;  2IN0 A;  1LWS A;  4KL5 A;  1UM2 A;  2JNQ A;  1ZDE A;  4OZ6 A;  4QFQ A;  2CW7 A;  2IMZ A;  2CW8 A;  1LWT A;  2L8L A;  3IFJ A;  1DQ3 A;  1EF0 A;  1ZD7 A;  5I0A A;  2IN8 A;  2IN9 A;  1MI8 A;  2LQM A;  3IGD A;  4LX3 A;  1AT0 A;  2KEQ A;  1VDE A;  1DFA A;  2LCJ A;  2LWY A;  1JVA A;  4O1R A;  2JMZ A; 
#chains in the Genus database with same CATH homology
 1GPP A;  4E2T A;  4KL6 A;  5K08 A;  4E2U A;  3NZM A;  4GIG A;  1AM2 A;  4O1S A;  2IN0 A;  1LWS A;  4KL5 A;  1UM2 A;  2JNQ A;  1ZDE A;  4OZ6 A;  2CW7 A;  2IMZ A;  2CW8 A;  1LWT A;  2L8L A;  3IFJ A;  1DQ3 A;  1EF0 A;  1ZD7 A;  5I0A A;  2IN8 A;  2IN9 A;  1MI8 A;  2LQM A;  3IGD A;  1AT0 A;  2KEQ A;  1VDE A;  1DFA A;  2LCJ A;  2LWY A;  1JVA A;  4O1R A;  2JMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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