3IGD | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	138
structure length	138
Chain Sequence	CLAEGTRIFDPVTGTTHRIEDVVYGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 138 atoms

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138 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Splicing
source organism	Mycobacterium tuberculosis
publication title	Selection and structure of hyperactive inteins: peripheral changes relayed to the catalytic center. pubmed doi rcsb
molecule keywords	Endonuclease PI-MtuI
total genus	25
structure length	138
sequence length	138
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2009-07-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14890	Intein_splicing	Intein splicing domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	3igdA00

2JMZA 1AT0A 2CW7A 2KEQA 1MI8A 4E2UA 5K08A 2IN8A 2IMZA 2IN9A 1VDEA 2L8LA 2JNQA 1DFAA 4KL6A 1AM2A 1GPPA 4GIGA 1ZDEA 1JVAA 1DQ3A 4OZ6A 1LWTA 1UM2A 4KL5A 4O1RA 1LWSA 1EF0A 2IN0A 1ZD7A 3IFJA 5I0AA 2CW8A 3IGDA 2LCJA 4E2TA 2LQMA 2LWYA 3NZMA 4O1SA
chains in the Genus database with same CATH superfamily

2JMZA 1AT0A 2CW7A 2KEQA 1MI8A 4E2UA 5K08A 2IN8A 2IMZA 2IN9A 1VDEA 2L8LA 2JNQA 4LX3A 1DFAA 4KL6A 1AM2A 1GPPA 4GIGA 1ZDEA 1JVAA 1DQ3A 4OZ6A 1LWTA 1UM2A 4KL5A 4O1RA 1LWSA 4QFQA 1EF0A 2IN0A 1ZD7A 3IFJA 5I0AA 2CW8A 3IGDA 2LCJA 4E2TA 2LQMA 2LWYA 3NZMA 4O1SA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2JMZ A;  1AT0 A;  2CW7 A;  2KEQ A;  1MI8 A;  4E2U A;  5K08 A;  2IN8 A;  2IMZ A;  2IN9 A;  1VDE A;  2L8L A;  2JNQ A;  1DFA A;  4KL6 A;  1AM2 A;  1GPP A;  4GIG A;  1ZDE A;  1JVA A;  1DQ3 A;  4OZ6 A;  1LWT A;  1UM2 A;  4KL5 A;  4O1R A;  1LWS A;  1EF0 A;  2IN0 A;  1ZD7 A;  3IFJ A;  5I0A A;  2CW8 A;  3IGD A;  2LCJ A;  4E2T A;  2LQM A;  2LWY A;  3NZM A;  4O1S A; 
#chains in the Genus database with same CATH topology
 2JMZ A;  1AT0 A;  2CW7 A;  2KEQ A;  1MI8 A;  4E2U A;  5K08 A;  2IN8 A;  2IMZ A;  2IN9 A;  1VDE A;  2L8L A;  2JNQ A;  4LX3 A;  1DFA A;  4KL6 A;  1AM2 A;  1GPP A;  4GIG A;  1ZDE A;  1JVA A;  1DQ3 A;  4OZ6 A;  1LWT A;  1UM2 A;  4KL5 A;  4O1R A;  1LWS A;  4QFQ A;  1EF0 A;  2IN0 A;  1ZD7 A;  3IFJ A;  5I0A A;  2CW8 A;  3IGD A;  2LCJ A;  4E2T A;  2LQM A;  2LWY A;  3NZM A;  4O1S A; 
#chains in the Genus database with same CATH homology
 2JMZ A;  1AT0 A;  2CW7 A;  2KEQ A;  1MI8 A;  4E2U A;  5K08 A;  2IN8 A;  2IMZ A;  2IN9 A;  1VDE A;  2L8L A;  2JNQ A;  1DFA A;  4KL6 A;  1AM2 A;  1GPP A;  4GIG A;  1ZDE A;  1JVA A;  1DQ3 A;  4OZ6 A;  1LWT A;  1UM2 A;  4KL5 A;  4O1R A;  1LWS A;  1EF0 A;  2IN0 A;  1ZD7 A;  3IFJ A;  5I0A A;  2CW8 A;  3IGD A;  2LCJ A;  4E2T A;  2LQM A;  2LWY A;  3NZM A;  4O1S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3IGDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations