3LMN | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	132
structure length	132
Chain Sequence	AEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of the Human Ubiquitin-Specific Protease 15 DUSP Domain rcsb
molecule keywords	Ubiquitin carboxyl-terminal hydrolase 15
molecule tags	Hydrolase
source organism	Homo sapiens
total genus	32
structure length	132
sequence length	132
chains with identical sequence	B
ec nomenclature	ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date	2010-01-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06337	DUSP	DUSP domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2230.10	Alpha Beta	2-Layer Sandwich	DUSP-like	DUSP-like	3lmnA01

3PPAA 3T9LA 4A3OA 3PV1A 4MEMA 3JYUA 3LMNA 4MELA 4A3PA 1W6VA 5CTRC
chains in the Genus database with same CATH superfamily

3PPAA 3T9LA 4A3OA 3PV1A 4MEMA 3JYUA 3LMNA 4MELA 4A3PA 1W6VA 5CTRC
chains in the Genus database with same CATH topology

3PPAA 3T9LA 4A3OA 3PV1A 4MEMA 3JYUA 3LMNA 4MELA 4A3PA 1W6VA 5CTRC
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3PPA A;  3T9L A;  4A3O A;  3PV1 A;  4MEM A;  3JYU A;  3LMN A;  4MEL A;  4A3P A;  1W6V A;  5CTR C; 
#chains in the Genus database with same CATH topology
 3PPA A;  3T9L A;  4A3O A;  3PV1 A;  4MEM A;  3JYU A;  3LMN A;  4MEL A;  4A3P A;  1W6V A;  5CTR C; 
#chains in the Genus database with same CATH homology
 3PPA A;  3T9L A;  4A3O A;  3PV1 A;  4MEM A;  3JYU A;  3LMN A;  4MEL A;  4A3P A;  1W6V A;  5CTR C;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3LMNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations