3NZM | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	163
structure length	163
Chain Sequence	PFCPGCLSFGTEILTVEYGPLPIGKIVSEEINCSVYSVDPEGRVYTQAIAQWHDRGEQEVLEYELEDGSVIRATSDHRFLTTDYQLLAIEEIFARQLDLLTLENIKQTEEALDNHRLPFPLLDAGTIKMVKVIGRRSLGVQRIFDIGLPQDHNFLLANGAIAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 163 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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163 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Synechocystis sp. pcc 6803
publication title	Structure of catalytically competent intein caught in a redox trap with functional and evolutionary implications. pubmed doi rcsb
molecule keywords	DNA polymerase III subunit alpha
total genus	44
structure length	163
sequence length	163
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2010-07-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	3nzmA00

2LWYA 1DQ3A 2LQMA 1EF0A 3IFJA 1JVAA 1VDEA 1LWSA 1UM2A 3NZMA 2IN8A 5K08A 4KL6A 2IN0A 1ZDEA 4OZ6A 1AM2A 1MI8A 4KL5A 4O1RA 2CW8A 1LWTA 2IN9A 5I0AA 1DFAA 2JMZA 1AT0A 2L8LA 2LCJA 2CW7A 2IMZA 1ZD7A 4E2UA 4O1SA 4E2TA 4GIGA 2JNQA 2KEQA 1GPPA 3IGDA
chains in the Genus database with same CATH superfamily

2LWYA 1DQ3A 2LQMA 1EF0A 3IFJA 1JVAA 1VDEA 1LWSA 1UM2A 3NZMA 2IN8A 5K08A 4KL6A 2IN0A 1ZDEA 4OZ6A 1AM2A 1MI8A 4KL5A 4O1RA 2CW8A 4LX3A 1LWTA 2IN9A 5I0AA 1DFAA 2JMZA 1AT0A 2L8LA 2LCJA 4QFQA 2CW7A 2IMZA 1ZD7A 4E2UA 4O1SA 4E2TA 4GIGA 2JNQA 2KEQA 1GPPA 3IGDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2LWY A;  1DQ3 A;  2LQM A;  1EF0 A;  3IFJ A;  1JVA A;  1VDE A;  1LWS A;  1UM2 A;  3NZM A;  2IN8 A;  5K08 A;  4KL6 A;  2IN0 A;  1ZDE A;  4OZ6 A;  1AM2 A;  1MI8 A;  4KL5 A;  4O1R A;  2CW8 A;  1LWT A;  2IN9 A;  5I0A A;  1DFA A;  2JMZ A;  1AT0 A;  2L8L A;  2LCJ A;  2CW7 A;  2IMZ A;  1ZD7 A;  4E2U A;  4O1S A;  4E2T A;  4GIG A;  2JNQ A;  2KEQ A;  1GPP A;  3IGD A; 
#chains in the Genus database with same CATH topology
 2LWY A;  1DQ3 A;  2LQM A;  1EF0 A;  3IFJ A;  1JVA A;  1VDE A;  1LWS A;  1UM2 A;  3NZM A;  2IN8 A;  5K08 A;  4KL6 A;  2IN0 A;  1ZDE A;  4OZ6 A;  1AM2 A;  1MI8 A;  4KL5 A;  4O1R A;  2CW8 A;  4LX3 A;  1LWT A;  2IN9 A;  5I0A A;  1DFA A;  2JMZ A;  1AT0 A;  2L8L A;  2LCJ A;  4QFQ A;  2CW7 A;  2IMZ A;  1ZD7 A;  4E2U A;  4O1S A;  4E2T A;  4GIG A;  2JNQ A;  2KEQ A;  1GPP A;  3IGD A; 
#chains in the Genus database with same CATH homology
 2LWY A;  1DQ3 A;  2LQM A;  1EF0 A;  3IFJ A;  1JVA A;  1VDE A;  1LWS A;  1UM2 A;  3NZM A;  2IN8 A;  5K08 A;  4KL6 A;  2IN0 A;  1ZDE A;  4OZ6 A;  1AM2 A;  1MI8 A;  4KL5 A;  4O1R A;  2CW8 A;  1LWT A;  2IN9 A;  5I0A A;  1DFA A;  2JMZ A;  1AT0 A;  2L8L A;  2LCJ A;  2CW7 A;  2IMZ A;  1ZD7 A;  4E2U A;  4O1S A;  4E2T A;  4GIG A;  2JNQ A;  2KEQ A;  1GPP A;  3IGD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3NZMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN