3PH4A

Clostridium thermocellum ribose-5-phosphate isomerase b with d-allose
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
148
structure length
148
Chain Sequence
MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQGGRHATRVGKIGEIEKKYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Ribose-5-phosphate isomerase
publication title Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics.
pubmed doi rcsb
source organism Clostridium thermocellum
total genus 58
structure length 148
sequence length 148
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02502 LacAB_rpiB Ribose/Galactose Isomerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1400.10 Alpha Beta 3-Layer(aba) Sandwich Ribose 5-phosphate Isomerase B; Chain: A, Sugar-phosphate isomerase, RpiB/LacA/LacB 3ph4A00
3HE8A 3PH4A 4U8FA 4LFLA 3SGWA 1O1XA 4LFKB 5IFZA 4LFNA 3ONOA 3HEEA 4LFMA 3K7OA 3K7SA 4LFLB 4U8EA 3S5PA 3SDWA 3QD5A 2VVQA 4LFNB 4LFMB 2BESA 3PH3A 2PPWA 1USLA 2VVPA 3C5YA 3M1PA 2VVRA 4LFKA 2VVOA 4EM8A 2BETA 3K7PA 3K8CA 1NN4A
chains in the Genus database with same CATH superfamily
3HE8A 3PH4A 4U8FA 4LFLA 3SGWA 1O1XA 4LFKB 5IFZA 4LFNA 3ONOA 3HEEA 4LFMA 3K7OA 3K7SA 4LFLB 4U8EA 3S5PA 3SDWA 3QD5A 2VVQA 4LFNB 4LFMB 2BESA 3PH3A 2PPWA 1USLA 2VVPA 3C5YA 3M1PA 2VVRA 4LFKA 2VVOA 4EM8A 2BETA 3K7PA 3K8CA 1NN4A
chains in the Genus database with same CATH topology
3HE8A 3PH4A 4U8FA 4LFLA 3SGWA 1O1XA 4LFKB 5IFZA 4LFNA 3ONOA 3HEEA 4LFMA 3K7OA 3K7SA 4LFLB 4U8EA 3S5PA 3SDWA 3QD5A 2VVQA 4LFNB 4LFMB 2BESA 3PH3A 2PPWA 1USLA 2VVPA 3C5YA 3M1PA 2VVRA 4LFKA 2VVOA 4EM8A 2BETA 3K7PA 3K8CA 1NN4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HE8 A;  3PH4 A;  4U8F A;  4LFL A;  3SGW A;  1O1X A;  4LFK B;  5IFZ A;  4LFN A;  3ONO A;  3HEE A;  4LFM A;  3K7O A;  3K7S A;  4LFL B;  4U8E A;  3S5P A;  3SDW A;  3QD5 A;  2VVQ A;  4LFN B;  4LFM B;  2BES A;  3PH3 A;  2PPW A;  1USL A;  2VVP A;  3C5Y A;  3M1P A;  2VVR A;  4LFK A;  2VVO A;  4EM8 A;  2BET A;  3K7P A;  3K8C A;  1NN4 A; 
#chains in the Genus database with same CATH topology
 3HE8 A;  3PH4 A;  4U8F A;  4LFL A;  3SGW A;  1O1X A;  4LFK B;  5IFZ A;  4LFN A;  3ONO A;  3HEE A;  4LFM A;  3K7O A;  3K7S A;  4LFL B;  4U8E A;  3S5P A;  3SDW A;  3QD5 A;  2VVQ A;  4LFN B;  4LFM B;  2BES A;  3PH3 A;  2PPW A;  1USL A;  2VVP A;  3C5Y A;  3M1P A;  2VVR A;  4LFK A;  2VVO A;  4EM8 A;  2BET A;  3K7P A;  3K8C A;  1NN4 A; 
#chains in the Genus database with same CATH homology
 3HE8 A;  3PH4 A;  4U8F A;  4LFL A;  3SGW A;  1O1X A;  4LFK B;  5IFZ A;  4LFN A;  3ONO A;  3HEE A;  4LFM A;  3K7O A;  3K7S A;  4LFL B;  4U8E A;  3S5P A;  3SDW A;  3QD5 A;  2VVQ A;  4LFN B;  4LFM B;  2BES A;  3PH3 A;  2PPW A;  1USL A;  2VVP A;  3C5Y A;  3M1P A;  2VVR A;  4LFK A;  2VVO A;  4EM8 A;  2BET A;  3K7P A;  3K8C A;  1NN4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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