3RZP | Genus

Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	259
structure length	254
Chain Sequence	NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 254 atoms

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254 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of the C194A mutant of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with preQ1 rcsb
molecule keywords	NADPH-dependent 7-cyano-7-deazaguanine reductase
molecule tags	Oxidoreductase
source organism	Vibrio cholerae
total genus	84
structure length	254
sequence length	259
chains with identical sequence	B, C, D
ec nomenclature	ec 1.7.1.13: PreQ(1) synthase.
pdb deposition date	2011-05-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14489	QueF	QueF-like protein
A	PF14819	QueF_N	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	3rzpA02
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	3rzpA01

1NBUA 2NM3A 4DU6A 1N3TA 1N3SA 1B9LA 4FGCA 5F3MA 1RSIA 1WPLA 1U68A 4GHMA 1A9CA 4AEYA 1DHNA 4UQFA 1RRIA 1FBXA 2CG8A 2NM2A 1RSDA 3S19A 1NBUB 1RS2A 3UXVA 4IQIA 3RJ4A 1NBUC 1RS4A 3O1KA 3RZPA 1FB1A 1RRWA 1RRYA 1WM9A 3UXJA 2O90A 2DHNA 3V9OA 1IS7A 1GTPA 4F8BA 3BP1A 1N3RA 5FARA 1WUQA 1WURA 1IS8A 3R2EA 1SQLA 1Z9WA 1A8RA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NBU A;  2NM3 A;  4DU6 A;  1N3T A;  1N3S A;  1B9L A;  4FGC A;  5F3M A;  1RSI A;  1WPL A;  1U68 A;  4GHM A;  1A9C A;  4AEY A;  1DHN A;  4UQF A;  1RRI A;  1FBX A;  2CG8 A;  2NM2 A;  1RSD A;  3S19 A;  1NBU B;  1RS2 A;  3UXV A;  4IQI A;  3RJ4 A;  1NBU C;  1RS4 A;  3O1K A;  3RZP A;  1FB1 A;  1RRW A;  1RRY A;  1WM9 A;  3UXJ A;  2O90 A;  2DHN A;  3V9O A;  1IS7 A;  1GTP A;  4F8B A;  3BP1 A;  1N3R A;  5FAR A;  1WUQ A;  1WUR A;  1IS8 A;  3R2E A;  1SQL A;  1Z9W A;  1A8R A; 
#chains in the Genus database with same CATH topology
 1NBU A;  2NM3 A;  4DU6 A;  1N3T A;  1N3S A;  1B9L A;  4FGC A;  5F3M A;  1RSI A;  1WPL A;  1U68 A;  4GHM A;  1A9C A;  4AEY A;  1DHN A;  4UQF A;  1RRI A;  1FBX A;  2CG8 A;  2NM2 A;  1RSD A;  3S19 A;  1NBU B;  1RS2 A;  3UXV A;  4IQI A;  3RJ4 A;  1NBU C;  1RS4 A;  3O1K A;  3RZP A;  1FB1 A;  1RRW A;  1RRY A;  1WM9 A;  3UXJ A;  2O90 A;  2DHN A;  3V9O A;  1IS7 A;  1GTP A;  4F8B A;  3BP1 A;  1N3R A;  5FAR A;  1WUQ A;  1WUR A;  1IS8 A;  3R2E A;  1SQL A;  1Z9W A;  1A8R A; 
#chains in the Genus database with same CATH homology
 1NBU A;  2NM3 A;  4DU6 A;  1N3T A;  1N3S A;  1B9L A;  4FGC A;  5F3M A;  1RSI A;  1WPL A;  1U68 A;  4GHM A;  1A9C A;  4AEY A;  1DHN A;  4UQF A;  1RRI A;  1FBX A;  2CG8 A;  2NM2 A;  1RSD A;  3S19 A;  1NBU B;  1RS2 A;  3UXV A;  4IQI A;  3RJ4 A;  1NBU C;  1RS4 A;  3O1K A;  3RZP A;  1FB1 A;  1RRW A;  1RRY A;  1WM9 A;  3UXJ A;  2O90 A;  2DHN A;  3V9O A;  1IS7 A;  1GTP A;  4F8B A;  3BP1 A;  1N3R A;  5FAR A;  1WUQ A;  1WUR A;  1IS8 A;  3R2E A;  1SQL A;  1Z9W A;  1A8R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3RZPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations