The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
66
|
sequence length |
225
|
structure length |
225
|
Chain Sequence |
TPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIEKMDEALAEIGFVFGEQWR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/dna
|
| molecule keywords |
Exonuclease
|
| publication title |
Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity.
pubmed doi rcsb |
| source organism |
Enterobacteria phage lambda
|
| total genus |
66
|
| structure length |
225
|
| sequence length |
225
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
3.1.11.3: Exodeoxyribonuclease (lambda-induced). |
| pdb deposition date | 2011-06-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09588 | YqaJ | YqaJ-like viral recombinase domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease; Chain A | Lambda Exonuclease; Chain A |
#chains in the Genus database with same CATH superfamily 4IC1 A; 4WUZ A; 4CEI A; 3U4Q A; 4CEH A; 3SZ4 A; 3K70 B; 3K93 A; 3SZ5 A; 3SYY A; 3SLP A; 4CEJ A; 3H4R A; 3U44 A; 1W36 B; 4R5Q A; 3L0A A; 1AVQ A; 5LD2 B; 3SM4 A; #chains in the Genus database with same CATH topology 1E6Y C; 3M2R C; 4IC1 A; 3M2V C; 3POT C; 4WUZ A; 4CEI A; 3U4Q A; 4CEH A; 3M2U C; 1E6V C; 3SZ4 A; 5G0R C; 3K70 B; 3K93 A; 3SZ5 A; 1HBN C; 3SYY A; 3SLP A; 4CEJ A; 3H4R A; 3U44 A; 1HBU C; 1W36 B; 4R5Q A; 3SQG C; 5A8W C; 3L0A A; 3M30 C; 1HBO C; 1HBM C; 5A8K C; 1AVQ A; 5A8R C; 5LD2 B; 1MRO C; 3M32 C; 3SM4 A; 3M1V C; 5A0Y C; #chains in the Genus database with same CATH homology 4IC1 A; 4WUZ A; 4CEI A; 3U4Q A; 4CEH A; 3SZ4 A; 3K70 B; 3K93 A; 3SZ5 A; 3SYY A; 3SLP A; 4CEJ A; 3H4R A; 3U44 A; 1W36 B; 4R5Q A; 3L0A A; 1AVQ A; 5LD2 B; 3SM4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
