3CD6K

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (7-8)S8 (80-81)S2 (12-13)S5 (46-47)S3 (16-20)EMPTYTII1 (13-16)S10 (94-97)O1 (20-22)TI1 (61-64)S4 (26-34)TII2 (34-37)S6 (51-60)TII3 (40-43)TII4 (48-51)S7 (67-75)TI4 (99-102)TII5 (64-67)TI2 (62-65)S9 (87-88)TI3 (82-85)AH1 (115-120)TVIII1 (128-131)AH2 (122-126)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 29
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 3cd6K00
1VQKK 3CCRK 1NJIL 1VQNK 1VQOK 1YHQK 2OTLK 3CCQK 3CC2K 1YJNK 3CXCJ 1M90L 1S72K 5GAEL 4WF9H 3I56K 4U67H 2ZJQH 1VQ8K 4IOCH 1KC8L 3CCVK 1Q81L 3CCEK 3CMAK 3CC4K 1KD1L 3CC7K 1Q86L 1K9ML 3J7ZK 5GAHL 2QA4K 4V19O 3I55K 1YIJK 3CCLK 5H1SM 3G4SK 4WCEH 5HL7H 4WFBH 5JVGH 1VQ5K 4WFNH 3J7YL 3CPWJ 1KQSJ 2ZJPH 1QVGJ 1VQ6K 1YJ9K 4UY8K 3OW2J 3PIPH 3G6EK 4IO9H 2ZJRH 1VQ7K 5MLCM 1N8RL 3PIOH 1M1KL 5GADL 1VQMK 2QEXK 1WHIA 1VQLK 3DLLH 3CCSK 2OTJK 3CMEK 1K73L 4WFAH 1Q82L 1JJ2J 1VQ9K 1QVFJ 4IOAH 1W2BJ 1Q7YL 5GAGL 1VQPK 1K8AL 1YI2K 5JVHH 1VQ4K 3G71K 5DM6H 1YJWK 1YITK 3CD6K 5DM7H 5AN9E 3CCMK 3CCJK 3CCUK 3CF5H
chains in the Genus database with same CATH superfamily
1VQKK 3CCRK 1NJIL 1VQNK 1VQOK 1YHQK 2OTLK 3CCQK 3CC2K 1YJNK 3CXCJ 1M90L 1S72K 5GAEL 4WF9H 3I56K 4U67H 2ZJQH 1VQ8K 4IOCH 1KC8L 3CCVK 1Q81L 3CCEK 3CMAK 3CC4K 1KD1L 3CC7K 1Q86L 1K9ML 3J7ZK 5GAHL 2QA4K 4V19O 3I55K 1YIJK 3CCLK 5H1SM 3G4SK 4WCEH 5HL7H 4WFBH 5JVGH 1VQ5K 4WFNH 3J7YL 3CPWJ 1KQSJ 2ZJPH 1QVGJ 1VQ6K 1YJ9K 4UY8K 3OW2J 3PIPH 3G6EK 4IO9H 2ZJRH 1VQ7K 5MLCM 1N8RL 3PIOH 1M1KL 5GADL 1VQMK 2QEXK 1WHIA 1VQLK 3DLLH 3CCSK 2OTJK 3CMEK 1K73L 4WFAH 1Q82L 1JJ2J 1VQ9K 1QVFJ 4IOAH 1W2BJ 1Q7YL 5GAGL 1VQPK 1K8AL 1YI2K 5JVHH 1VQ4K 3G71K 5DM6H 1YJWK 1YITK 3CD6K 5DM7H 5AN9E 3CCMK 3CCJK 3CCUK 3CF5H
chains in the Genus database with same CATH topology
1VQKK 3CCRK 1NJIL 1VQNK 1VQOK 1YHQK 2OTLK 3CCQK 3CC2K 1YJNK 3CXCJ 1M90L 1S72K 5GAEL 4WF9H 3I56K 4U67H 2ZJQH 1VQ8K 4IOCH 1KC8L 3CCVK 1Q81L 3CCEK 3CMAK 3CC4K 1KD1L 3CC7K 1Q86L 1K9ML 3J7ZK 5GAHL 2QA4K 4V19O 3I55K 1YIJK 3CCLK 5H1SM 3G4SK 4WCEH 5HL7H 4WFBH 5JVGH 1VQ5K 4WFNH 3J7YL 3CPWJ 1KQSJ 2ZJPH 1QVGJ 1VQ6K 1YJ9K 4UY8K 3OW2J 3PIPH 3G6EK 4IO9H 2ZJRH 1VQ7K 5MLCM 1N8RL 3PIOH 1M1KL 5GADL 1VQMK 2QEXK 1WHIA 1VQLK 3DLLH 3CCSK 2OTJK 3CMEK 1K73L 4WFAH 1Q82L 1JJ2J 1VQ9K 1QVFJ 4IOAH 1W2BJ 1Q7YL 5GAGL 1VQPK 1K8AL 1YI2K 5JVHH 1VQ4K 3G71K 5DM6H 1YJWK 1YITK 3CD6K 5DM7H 5AN9E 3CCMK 3CCJK 3CCUK 3CF5H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQK K;  3CCR K;  1NJI L;  1VQN K;  1VQO K;  1YHQ K;  2OTL K;  3CCQ K;  3CC2 K;  1YJN K;  3CXC J;  1M90 L;  1S72 K;  5GAE L;  4WF9 H;  3I56 K;  4U67 H;  2ZJQ H;  1VQ8 K;  4IOC H;  1KC8 L;  3CCV K;  1Q81 L;  3CCE K;  3CMA K;  3CC4 K;  1KD1 L;  3CC7 K;  1Q86 L;  1K9M L;  3J7Z K;  5GAH L;  2QA4 K;  4V19 O;  3I55 K;  1YIJ K;  3CCL K;  5H1S M;  3G4S K;  4WCE H;  5HL7 H;  4WFB H;  5JVG H;  1VQ5 K;  4WFN H;  3J7Y L;  3CPW J;  1KQS J;  2ZJP H;  1QVG J;  1VQ6 K;  1YJ9 K;  4UY8 K;  3OW2 J;  3PIP H;  3G6E K;  4IO9 H;  2ZJR H;  1VQ7 K;  5MLC M;  1N8R L;  3PIO H;  1M1K L;  5GAD L;  1VQM K;  2QEX K;  1WHI A;  1VQL K;  3DLL H;  3CCS K;  2OTJ K;  3CME K;  1K73 L;  4WFA H;  1Q82 L;  1JJ2 J;  1VQ9 K;  1QVF J;  4IOA H;  1W2B J;  1Q7Y L;  5GAG L;  1VQP K;  1K8A L;  1YI2 K;  5JVH H;  1VQ4 K;  3G71 K;  5DM6 H;  1YJW K;  1YIT K;  3CD6 K;  5DM7 H;  5AN9 E;  3CCM K;  3CCJ K;  3CCU K;  3CF5 H; 
#chains in the Genus database with same CATH topology
 1VQK K;  3CCR K;  1NJI L;  1VQN K;  1VQO K;  1YHQ K;  2OTL K;  3CCQ K;  3CC2 K;  1YJN K;  3CXC J;  1M90 L;  1S72 K;  5GAE L;  4WF9 H;  3I56 K;  4U67 H;  2ZJQ H;  1VQ8 K;  4IOC H;  1KC8 L;  3CCV K;  1Q81 L;  3CCE K;  3CMA K;  3CC4 K;  1KD1 L;  3CC7 K;  1Q86 L;  1K9M L;  3J7Z K;  5GAH L;  2QA4 K;  4V19 O;  3I55 K;  1YIJ K;  3CCL K;  5H1S M;  3G4S K;  4WCE H;  5HL7 H;  4WFB H;  5JVG H;  1VQ5 K;  4WFN H;  3J7Y L;  3CPW J;  1KQS J;  2ZJP H;  1QVG J;  1VQ6 K;  1YJ9 K;  4UY8 K;  3OW2 J;  3PIP H;  3G6E K;  4IO9 H;  2ZJR H;  1VQ7 K;  5MLC M;  1N8R L;  3PIO H;  1M1K L;  5GAD L;  1VQM K;  2QEX K;  1WHI A;  1VQL K;  3DLL H;  3CCS K;  2OTJ K;  3CME K;  1K73 L;  4WFA H;  1Q82 L;  1JJ2 J;  1VQ9 K;  1QVF J;  4IOA H;  1W2B J;  1Q7Y L;  5GAG L;  1VQP K;  1K8A L;  1YI2 K;  5JVH H;  1VQ4 K;  3G71 K;  5DM6 H;  1YJW K;  1YIT K;  3CD6 K;  5DM7 H;  5AN9 E;  3CCM K;  3CCJ K;  3CCU K;  3CF5 H; 
#chains in the Genus database with same CATH homology
 1VQK K;  3CCR K;  1NJI L;  1VQN K;  1VQO K;  1YHQ K;  2OTL K;  3CCQ K;  3CC2 K;  1YJN K;  3CXC J;  1M90 L;  1S72 K;  5GAE L;  4WF9 H;  3I56 K;  4U67 H;  2ZJQ H;  1VQ8 K;  4IOC H;  1KC8 L;  3CCV K;  1Q81 L;  3CCE K;  3CMA K;  3CC4 K;  1KD1 L;  3CC7 K;  1Q86 L;  1K9M L;  3J7Z K;  5GAH L;  2QA4 K;  4V19 O;  3I55 K;  1YIJ K;  3CCL K;  5H1S M;  3G4S K;  4WCE H;  5HL7 H;  4WFB H;  5JVG H;  1VQ5 K;  4WFN H;  3J7Y L;  3CPW J;  1KQS J;  2ZJP H;  1QVG J;  1VQ6 K;  1YJ9 K;  4UY8 K;  3OW2 J;  3PIP H;  3G6E K;  4IO9 H;  2ZJR H;  1VQ7 K;  5MLC M;  1N8R L;  3PIO H;  1M1K L;  5GAD L;  1VQM K;  2QEX K;  1WHI A;  1VQL K;  3DLL H;  3CCS K;  2OTJ K;  3CME K;  1K73 L;  4WFA H;  1Q82 L;  1JJ2 J;  1VQ9 K;  1QVF J;  4IOA H;  1W2B J;  1Q7Y L;  5GAG L;  1VQP K;  1K8A L;  1YI2 K;  5JVH H;  1VQ4 K;  3G71 K;  5DM6 H;  1YJW K;  1YIT K;  3CD6 K;  5DM7 H;  5AN9 E;  3CCM K;  3CCJ K;  3CCU K;  3CF5 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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