5GAHL

Rnc in complex with srp with detached ng domain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
123
structure length
123
Chain Sequence
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 22
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 5gahL00
1VQ4K 3CCQK 3CXCJ 2ZJPH 1YJWK 2OTJK 3I56K 1NJIL 3CPWJ 1Q82L 3CCSK 1VQ9K 3CCUK 4WFNH 5JVGH 2QA4K 1VQKK 4UY8K 1VQ5K 4IOAH 3CF5H 2ZJQH 5AN9E 1N8RL 2QEXK 5HL7H 3CCLK 1VQ6K 5GAHL 1KD1L 1YITK 3CD6K 3CMAK 5DM7H 3G6EK 3CC7K 4WCEH 3I55K 3CMEK 3CCVK 5GADL 1JJ2J 4WFAH 5DM6H 1VQOK 4IO9H 1KC8L 1VQLK 1VQ8K 4U67H 3OW2J 4WF9H 4WFBH 1KQSJ 1VQPK 1S72K 2OTLK 1Q86L 1WHIA 1YJNK 3J7YL 1Q81L 3DLLH 1QVGJ 1K8AL 1K73L 1YIJK 1QVFJ 1VQNK 1YI2K 3PIOH 3CCRK 5H1SM 5GAGL 1VQ7K 3CC2K 1YHQK 3CC4K 1YJ9K 4V19O 3CCJK 1VQMK 5JVHH 3PIPH 3CCEK 1Q7YL 3G71K 3G4SK 1W2BJ 2ZJRH 3CCMK 4IOCH 1K9ML 1M90L 5GAEL 1M1KL 5MLCM 3J7ZK
chains in the Genus database with same CATH superfamily
1VQ4K 3CCQK 3CXCJ 2ZJPH 1YJWK 2OTJK 3I56K 1NJIL 3CPWJ 1Q82L 3CCSK 1VQ9K 3CCUK 4WFNH 5JVGH 2QA4K 1VQKK 4UY8K 1VQ5K 4IOAH 3CF5H 2ZJQH 5AN9E 1N8RL 2QEXK 5HL7H 3CCLK 1VQ6K 5GAHL 1KD1L 1YITK 3CD6K 3CMAK 5DM7H 3G6EK 3CC7K 4WCEH 3I55K 3CMEK 3CCVK 5GADL 1JJ2J 4WFAH 5DM6H 1VQOK 4IO9H 1KC8L 1VQLK 1VQ8K 4U67H 3OW2J 4WF9H 4WFBH 1KQSJ 1VQPK 1S72K 2OTLK 1Q86L 1WHIA 1YJNK 3J7YL 1Q81L 3DLLH 1QVGJ 1K8AL 1K73L 1YIJK 1QVFJ 1VQNK 1YI2K 3PIOH 3CCRK 5H1SM 5GAGL 1VQ7K 3CC2K 1YHQK 3CC4K 1YJ9K 4V19O 3CCJK 1VQMK 5JVHH 3PIPH 3CCEK 1Q7YL 3G71K 3G4SK 1W2BJ 2ZJRH 3CCMK 4IOCH 1K9ML 1M90L 5GAEL 1M1KL 5MLCM 3J7ZK
chains in the Genus database with same CATH topology
1VQ4K 3CCQK 3CXCJ 2ZJPH 1YJWK 2OTJK 3I56K 1NJIL 3CPWJ 1Q82L 3CCSK 1VQ9K 3CCUK 4WFNH 5JVGH 2QA4K 1VQKK 4UY8K 1VQ5K 4IOAH 3CF5H 2ZJQH 5AN9E 1N8RL 2QEXK 5HL7H 3CCLK 1VQ6K 5GAHL 1KD1L 1YITK 3CD6K 3CMAK 5DM7H 3G6EK 3CC7K 4WCEH 3I55K 3CMEK 3CCVK 5GADL 1JJ2J 4WFAH 5DM6H 1VQOK 4IO9H 1KC8L 1VQLK 1VQ8K 4U67H 3OW2J 4WF9H 4WFBH 1KQSJ 1VQPK 1S72K 2OTLK 1Q86L 1WHIA 1YJNK 3J7YL 1Q81L 3DLLH 1QVGJ 1K8AL 1K73L 1YIJK 1QVFJ 1VQNK 1YI2K 3PIOH 3CCRK 5H1SM 5GAGL 1VQ7K 3CC2K 1YHQK 3CC4K 1YJ9K 4V19O 3CCJK 1VQMK 5JVHH 3PIPH 3CCEK 1Q7YL 3G71K 3G4SK 1W2BJ 2ZJRH 3CCMK 4IOCH 1K9ML 1M90L 5GAEL 1M1KL 5MLCM 3J7ZK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ4 K;  3CCQ K;  3CXC J;  2ZJP H;  1YJW K;  2OTJ K;  3I56 K;  1NJI L;  3CPW J;  1Q82 L;  3CCS K;  1VQ9 K;  3CCU K;  4WFN H;  5JVG H;  2QA4 K;  1VQK K;  4UY8 K;  1VQ5 K;  4IOA H;  3CF5 H;  2ZJQ H;  5AN9 E;  1N8R L;  2QEX K;  5HL7 H;  3CCL K;  1VQ6 K;  5GAH L;  1KD1 L;  1YIT K;  3CD6 K;  3CMA K;  5DM7 H;  3G6E K;  3CC7 K;  4WCE H;  3I55 K;  3CME K;  3CCV K;  5GAD L;  1JJ2 J;  4WFA H;  5DM6 H;  1VQO K;  4IO9 H;  1KC8 L;  1VQL K;  1VQ8 K;  4U67 H;  3OW2 J;  4WF9 H;  4WFB H;  1KQS J;  1VQP K;  1S72 K;  2OTL K;  1Q86 L;  1WHI A;  1YJN K;  3J7Y L;  1Q81 L;  3DLL H;  1QVG J;  1K8A L;  1K73 L;  1YIJ K;  1QVF J;  1VQN K;  1YI2 K;  3PIO H;  3CCR K;  5H1S M;  5GAG L;  1VQ7 K;  3CC2 K;  1YHQ K;  3CC4 K;  1YJ9 K;  4V19 O;  3CCJ K;  1VQM K;  5JVH H;  3PIP H;  3CCE K;  1Q7Y L;  3G71 K;  3G4S K;  1W2B J;  2ZJR H;  3CCM K;  4IOC H;  1K9M L;  1M90 L;  5GAE L;  1M1K L;  5MLC M;  3J7Z K; 
#chains in the Genus database with same CATH topology
 1VQ4 K;  3CCQ K;  3CXC J;  2ZJP H;  1YJW K;  2OTJ K;  3I56 K;  1NJI L;  3CPW J;  1Q82 L;  3CCS K;  1VQ9 K;  3CCU K;  4WFN H;  5JVG H;  2QA4 K;  1VQK K;  4UY8 K;  1VQ5 K;  4IOA H;  3CF5 H;  2ZJQ H;  5AN9 E;  1N8R L;  2QEX K;  5HL7 H;  3CCL K;  1VQ6 K;  5GAH L;  1KD1 L;  1YIT K;  3CD6 K;  3CMA K;  5DM7 H;  3G6E K;  3CC7 K;  4WCE H;  3I55 K;  3CME K;  3CCV K;  5GAD L;  1JJ2 J;  4WFA H;  5DM6 H;  1VQO K;  4IO9 H;  1KC8 L;  1VQL K;  1VQ8 K;  4U67 H;  3OW2 J;  4WF9 H;  4WFB H;  1KQS J;  1VQP K;  1S72 K;  2OTL K;  1Q86 L;  1WHI A;  1YJN K;  3J7Y L;  1Q81 L;  3DLL H;  1QVG J;  1K8A L;  1K73 L;  1YIJ K;  1QVF J;  1VQN K;  1YI2 K;  3PIO H;  3CCR K;  5H1S M;  5GAG L;  1VQ7 K;  3CC2 K;  1YHQ K;  3CC4 K;  1YJ9 K;  4V19 O;  3CCJ K;  1VQM K;  5JVH H;  3PIP H;  3CCE K;  1Q7Y L;  3G71 K;  3G4S K;  1W2B J;  2ZJR H;  3CCM K;  4IOC H;  1K9M L;  1M90 L;  5GAE L;  1M1K L;  5MLC M;  3J7Z K; 
#chains in the Genus database with same CATH homology
 1VQ4 K;  3CCQ K;  3CXC J;  2ZJP H;  1YJW K;  2OTJ K;  3I56 K;  1NJI L;  3CPW J;  1Q82 L;  3CCS K;  1VQ9 K;  3CCU K;  4WFN H;  5JVG H;  2QA4 K;  1VQK K;  4UY8 K;  1VQ5 K;  4IOA H;  3CF5 H;  2ZJQ H;  5AN9 E;  1N8R L;  2QEX K;  5HL7 H;  3CCL K;  1VQ6 K;  5GAH L;  1KD1 L;  1YIT K;  3CD6 K;  3CMA K;  5DM7 H;  3G6E K;  3CC7 K;  4WCE H;  3I55 K;  3CME K;  3CCV K;  5GAD L;  1JJ2 J;  4WFA H;  5DM6 H;  1VQO K;  4IO9 H;  1KC8 L;  1VQL K;  1VQ8 K;  4U67 H;  3OW2 J;  4WF9 H;  4WFB H;  1KQS J;  1VQP K;  1S72 K;  2OTL K;  1Q86 L;  1WHI A;  1YJN K;  3J7Y L;  1Q81 L;  3DLL H;  1QVG J;  1K8A L;  1K73 L;  1YIJ K;  1QVF J;  1VQN K;  1YI2 K;  3PIO H;  3CCR K;  5H1S M;  5GAG L;  1VQ7 K;  3CC2 K;  1YHQ K;  3CC4 K;  1YJ9 K;  4V19 O;  3CCJ K;  1VQM K;  5JVH H;  3PIP H;  3CCE K;  1Q7Y L;  3G71 K;  3G4S K;  1W2B J;  2ZJR H;  3CCM K;  4IOC H;  1K9M L;  1M90 L;  5GAE L;  1M1K L;  5MLC M;  3J7Z K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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