4AEY | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	117
structure length	107
Chain Sequence	PGMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d037f276d165fa5d4f79bd9/pdb.gz): 1164 ms

reading 107 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

107 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:106});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Folx from Pseudomonas Aeruginosa is Octameric in Both Crystal and Solution. pubmed doi rcsb
molecule keywords	D-ERYTHRO-7,8-DIHYDRONEOPTERIN TRIPHOSPHATE EPIMERASE
molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
total genus	22
structure length	107
sequence length	117
ec nomenclature
pdb deposition date	2012-01-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02152	FolB	Dihydroneopterin aldolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	4aeyA00

1Z9WA 1A9CA 1IS7A 4DU6A 1NBUA 4AEYA 3O1KA 1RRIA 3UXJA 1A8RA 3R2EA 4IQIA 3S19A 1FB1A 1WPLA 3BP1A 2CG8A 1RRYA 2NM3A 4GHMA 1GTPA 1WUQA 1B9LA 4UQFA 1NBUC 2NM2A 1RRWA 1DHNA 3V9OA 1WM9A 5F3MA 3RJ4A 1N3SA 4FGCA 1FBXA 1NBUB 1RS2A 1U68A 3UXVA 1WURA 2DHNA 4F8BA 1IS8A 1N3RA 1RS4A 1RSDA 2O90A 3RZPA 1SQLA 1RSIA 5FARA 1N3TA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1Z9W A;  1A9C A;  1IS7 A;  4DU6 A;  1NBU A;  4AEY A;  3O1K A;  1RRI A;  3UXJ A;  1A8R A;  3R2E A;  4IQI A;  3S19 A;  1FB1 A;  1WPL A;  3BP1 A;  2CG8 A;  1RRY A;  2NM3 A;  4GHM A;  1GTP A;  1WUQ A;  1B9L A;  4UQF A;  1NBU C;  2NM2 A;  1RRW A;  1DHN A;  3V9O A;  1WM9 A;  5F3M A;  3RJ4 A;  1N3S A;  4FGC A;  1FBX A;  1NBU B;  1RS2 A;  1U68 A;  3UXV A;  1WUR A;  2DHN A;  4F8B A;  1IS8 A;  1N3R A;  1RS4 A;  1RSD A;  2O90 A;  3RZP A;  1SQL A;  1RSI A;  5FAR A;  1N3T A; 
#chains in the Genus database with same CATH topology
 1Z9W A;  1A9C A;  1IS7 A;  4DU6 A;  1NBU A;  4AEY A;  3O1K A;  1RRI A;  3UXJ A;  1A8R A;  3R2E A;  4IQI A;  3S19 A;  1FB1 A;  1WPL A;  3BP1 A;  2CG8 A;  1RRY A;  2NM3 A;  4GHM A;  1GTP A;  1WUQ A;  1B9L A;  4UQF A;  1NBU C;  2NM2 A;  1RRW A;  1DHN A;  3V9O A;  1WM9 A;  5F3M A;  3RJ4 A;  1N3S A;  4FGC A;  1FBX A;  1NBU B;  1RS2 A;  1U68 A;  3UXV A;  1WUR A;  2DHN A;  4F8B A;  1IS8 A;  1N3R A;  1RS4 A;  1RSD A;  2O90 A;  3RZP A;  1SQL A;  1RSI A;  5FAR A;  1N3T A; 
#chains in the Genus database with same CATH homology
 1Z9W A;  1A9C A;  1IS7 A;  4DU6 A;  1NBU A;  4AEY A;  3O1K A;  1RRI A;  3UXJ A;  1A8R A;  3R2E A;  4IQI A;  3S19 A;  1FB1 A;  1WPL A;  3BP1 A;  2CG8 A;  1RRY A;  2NM3 A;  4GHM A;  1GTP A;  1WUQ A;  1B9L A;  4UQF A;  1NBU C;  2NM2 A;  1RRW A;  1DHN A;  3V9O A;  1WM9 A;  5F3M A;  3RJ4 A;  1N3S A;  4FGC A;  1FBX A;  1NBU B;  1RS2 A;  1U68 A;  3UXV A;  1WUR A;  2DHN A;  4F8B A;  1IS8 A;  1N3R A;  1RS4 A;  1RSD A;  2O90 A;  3RZP A;  1SQL A;  1RSI A;  5FAR A;  1N3T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AEYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations