4F8B | Genus

Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	139
structure length	139
Chain Sequence	NYLFEYAPDVLESFPNKHVNRDYFVKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGKPGTKYEKMAEYRMMNHDLYP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 139 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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139 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Bacillus subtilis subsp. subtilis
publication title	Structural basis of biological nitrile reduction. pubmed doi rcsb
molecule keywords	NADPH-dependent 7-cyano-7-deazaguanine reductase
total genus	41
structure length	139
sequence length	139
chains with identical sequence	B, C, D, E
ec nomenclature	ec 1.7.1.13: PreQ(1) synthase.
pdb deposition date	2012-05-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14489	QueF	QueF-like protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	4f8bA00

3BP1A 1RRYA 4IQIA 1N3RA 1N3TA 1DHNA 1RRIA 3V9OA 4AEYA 4F8BA 1IS7A 1B9LA 1NBUB 1WM9A 3S19A 5F3MA 4DU6A 5FARA 2CG8A 1IS8A 3O1KA 1A9CA 4UQFA 1NBUC 4GHMA 1N3SA 2O90A 1SQLA 1RSIA 1U68A 1WPLA 3UXVA 1WUQA 1RS2A 2NM2A 1GTPA 1Z9WA 2NM3A 1RS4A 3UXJA 2DHNA 1FBXA 1RSDA 3R2EA 1A8RA 1NBUA 1WURA 4FGCA 3RJ4A 1RRWA 1FB1A 3RZPA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3BP1 A;  1RRY A;  4IQI A;  1N3R A;  1N3T A;  1DHN A;  1RRI A;  3V9O A;  4AEY A;  4F8B A;  1IS7 A;  1B9L A;  1NBU B;  1WM9 A;  3S19 A;  5F3M A;  4DU6 A;  5FAR A;  2CG8 A;  1IS8 A;  3O1K A;  1A9C A;  4UQF A;  1NBU C;  4GHM A;  1N3S A;  2O90 A;  1SQL A;  1RSI A;  1U68 A;  1WPL A;  3UXV A;  1WUQ A;  1RS2 A;  2NM2 A;  1GTP A;  1Z9W A;  2NM3 A;  1RS4 A;  3UXJ A;  2DHN A;  1FBX A;  1RSD A;  3R2E A;  1A8R A;  1NBU A;  1WUR A;  4FGC A;  3RJ4 A;  1RRW A;  1FB1 A;  3RZP A; 
#chains in the Genus database with same CATH topology
 3BP1 A;  1RRY A;  4IQI A;  1N3R A;  1N3T A;  1DHN A;  1RRI A;  3V9O A;  4AEY A;  4F8B A;  1IS7 A;  1B9L A;  1NBU B;  1WM9 A;  3S19 A;  5F3M A;  4DU6 A;  5FAR A;  2CG8 A;  1IS8 A;  3O1K A;  1A9C A;  4UQF A;  1NBU C;  4GHM A;  1N3S A;  2O90 A;  1SQL A;  1RSI A;  1U68 A;  1WPL A;  3UXV A;  1WUQ A;  1RS2 A;  2NM2 A;  1GTP A;  1Z9W A;  2NM3 A;  1RS4 A;  3UXJ A;  2DHN A;  1FBX A;  1RSD A;  3R2E A;  1A8R A;  1NBU A;  1WUR A;  4FGC A;  3RJ4 A;  1RRW A;  1FB1 A;  3RZP A; 
#chains in the Genus database with same CATH homology
 3BP1 A;  1RRY A;  4IQI A;  1N3R A;  1N3T A;  1DHN A;  1RRI A;  3V9O A;  4AEY A;  4F8B A;  1IS7 A;  1B9L A;  1NBU B;  1WM9 A;  3S19 A;  5F3M A;  4DU6 A;  5FAR A;  2CG8 A;  1IS8 A;  3O1K A;  1A9C A;  4UQF A;  1NBU C;  4GHM A;  1N3S A;  2O90 A;  1SQL A;  1RSI A;  1U68 A;  1WPL A;  3UXV A;  1WUQ A;  1RS2 A;  2NM2 A;  1GTP A;  1Z9W A;  2NM3 A;  1RS4 A;  3UXJ A;  2DHN A;  1FBX A;  1RSD A;  3R2E A;  1A8R A;  1NBU A;  1WUR A;  4FGC A;  3RJ4 A;  1RRW A;  1FB1 A;  3RZP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4F8BA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations