4KL6 | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	136
structure length	136
Chain Sequence	GGALSYETEILTVEYGLLPIGKIVEKRIECTVYSVDNNGNIYTQPVAQWHDRGEQEVFEYCLEDGSLIRATKDHKFMVDGQMLPIDEIFERELDLMRNPGIKIATRKYLGKQNVYDIGVERDHNFALKNGFIASNA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 136 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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136 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Nostoc punctiforme
publication title	Intermolecular domain swapping induces intein-mediated protein alternative splicing. pubmed doi rcsb
molecule keywords	DNA-directed DNA polymerase,Nucleic acid binding, OB-fold, t
total genus	15
structure length	136
sequence length	136
chains with identical sequence	B, C, D
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2013-05-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	4kl6A00

2IMZA 1AM2A 1VDEA 4GIGA 4OZ6A 2IN9A 2LCJA 5K08A 2IN0A 1DQ3A 4KL5A 1EF0A 2CW8A 2CW7A 4O1RA 2JNQA 1MI8A 2LWYA 5I0AA 2LQMA 2IN8A 2L8LA 4O1SA 3NZMA 2JMZA 1ZD7A 3IGDA 4E2UA 1AT0A 1UM2A 2KEQA 1ZDEA 3IFJA 1GPPA 1JVAA 1LWTA 1DFAA 1LWSA 4KL6A 4E2TA
chains in the Genus database with same CATH superfamily

2IMZA 1AM2A 1VDEA 4GIGA 4OZ6A 2IN9A 2LCJA 5K08A 2IN0A 4LX3A 1DQ3A 4KL5A 1EF0A 2CW8A 2CW7A 4O1RA 2JNQA 1MI8A 2LWYA 5I0AA 2LQMA 2IN8A 2L8LA 4O1SA 3NZMA 2JMZA 1ZD7A 3IGDA 4E2UA 4QFQA 1AT0A 1UM2A 2KEQA 1ZDEA 3IFJA 1GPPA 1JVAA 1LWTA 1DFAA 1LWSA 4KL6A 4E2TA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A; 
#chains in the Genus database with same CATH topology
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  4LX3 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  4QFQ A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A; 
#chains in the Genus database with same CATH homology
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4KL6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN