4LX3 | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	101
structure length	101
Chain Sequence	HHCLSYETEILTVEYGLLPIGKIVEKRIECTVYSVDNNGNIYTQPVAQWHDRGEQEVFEYCLEDGSLIRATKDHKFMTVDGQMLPIDEIFERELDLMRVDN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 101 atoms

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101 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Nostoc punctiforme
publication title	Conserved Residues that Modulate Protein trans-Splicing of Npu DnaE Split Intein pubmed doi rcsb
molecule keywords	DNA polymerase III, alpha subunit
total genus	18
structure length	101
sequence length	101
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2013-07-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.20	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Endonuclease - Pi-scei; Chain A, domain 1	4lx3A00

4LX3A 4QFQA
chains in the Genus database with same CATH superfamily

2IN8A 2JMZA 1ZD7A 5I0AA 2IN9A 3IFJA 1DQ3A 2IN0A 4E2TA 1EF0A 2LQMA 2CW7A 4OZ6A 1AT0A 4LX3A 3NZMA 2CW8A 1VDEA 4O1SA 2KEQA 1LWSA 4E2UA 1ZDEA 1DFAA 4GIGA 5K08A 4KL6A 1AM2A 1LWTA 4KL5A 1GPPA 2LWYA 1MI8A 4QFQA 2IMZA 3IGDA 2JNQA 1JVAA 1UM2A 2LCJA 2L8LA 4O1RA
chains in the Genus database with same CATH topology

4LX3A 4QFQA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LX3 A;  4QFQ A; 
#chains in the Genus database with same CATH topology
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  4LX3 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  4QFQ A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A; 
#chains in the Genus database with same CATH homology
 4LX3 A;  4QFQ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4LX3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN