4WF9H

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
122
structure length
122
Chain Sequence
MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKAVIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPEVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-3)S4 (32-33)S2 (6-10)TII1 (3-6)S9 (83-88)EMPTYTIV5 (93-96)TVIII2 (50-53)TII3 (47-50)S5 (37-46)TII2 (34-37)S6 (56-64)TIV2 (65-68)S7 (69-71)TI'1 (71-74)AH1 (104-109)S8 (75-77)TIV4 (88-91)S3 (16-24)TII4 (53-56)AH2 (112-117)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 24
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 4wf9H00
1N8RL 1JJ2J 1K9ML 5GADL 3CMEK 3CMAK 2ZJRH 1Q7YL 3CCRK 5H1SM 2ZJPH 1VQ4K 3CCMK 3CC7K 1YJWK 1Q82L 1QVGJ 3CCLK 3CC4K 1VQKK 3I56K 5JVHH 3J7ZK 4WFBH 1VQ9K 3CCJK 1NJIL 1VQ5K 5HL7H 3CD6K 2OTJK 3I55K 2QEXK 1WHIA 3OW2J 1VQ6K 5JVGH 3J7YL 3G71K 4WFNH 1VQOK 4WFAH 1YJNK 1QVFJ 4WF9H 2ZJQH 1VQ7K 1YHQK 3CPWJ 5DM6H 4IOAH 1K73L 3CCUK 5DM7H 3G6EK 3CCVK 3G4SK 3DLLH 1YITK 1K8AL 1YI2K 4IOCH 1VQNK 3CCEK 1KC8L 2OTLK 1VQPK 4IO9H 4UY8K 3CF5H 3CCSK 1W2BJ 1KD1L 1Q86L 5GAHL 3CC2K 1M90L 4V19O 3PIPH 3CCQK 1S72K 1YJ9K 1VQLK 1YIJK 3CXCJ 1VQMK 4U67H 2QA4K 5MLCM 5GAGL 4WCEH 5AN9E 3PIOH 1M1KL 1KQSJ 1VQ8K 1Q81L 5GAEL
chains in the Genus database with same CATH superfamily
1N8RL 1JJ2J 1K9ML 5GADL 3CMEK 3CMAK 2ZJRH 1Q7YL 3CCRK 5H1SM 2ZJPH 1VQ4K 3CCMK 3CC7K 1YJWK 1Q82L 1QVGJ 3CCLK 3CC4K 1VQKK 3I56K 5JVHH 3J7ZK 4WFBH 1VQ9K 3CCJK 1NJIL 1VQ5K 5HL7H 3CD6K 2OTJK 3I55K 2QEXK 1WHIA 3OW2J 1VQ6K 5JVGH 3J7YL 3G71K 4WFNH 1VQOK 4WFAH 1YJNK 1QVFJ 4WF9H 2ZJQH 1VQ7K 1YHQK 3CPWJ 5DM6H 4IOAH 1K73L 3CCUK 5DM7H 3G6EK 3CCVK 3G4SK 3DLLH 1YITK 1K8AL 1YI2K 4IOCH 1VQNK 3CCEK 1KC8L 2OTLK 1VQPK 4IO9H 4UY8K 3CF5H 3CCSK 1W2BJ 1KD1L 1Q86L 5GAHL 3CC2K 1M90L 4V19O 3PIPH 3CCQK 1S72K 1YJ9K 1VQLK 1YIJK 3CXCJ 1VQMK 4U67H 2QA4K 5MLCM 5GAGL 4WCEH 5AN9E 3PIOH 1M1KL 1KQSJ 1VQ8K 1Q81L 5GAEL
chains in the Genus database with same CATH topology
1N8RL 1JJ2J 1K9ML 5GADL 3CMEK 3CMAK 2ZJRH 1Q7YL 3CCRK 5H1SM 2ZJPH 1VQ4K 3CCMK 3CC7K 1YJWK 1Q82L 1QVGJ 3CCLK 3CC4K 1VQKK 3I56K 5JVHH 3J7ZK 4WFBH 1VQ9K 3CCJK 1NJIL 1VQ5K 5HL7H 3CD6K 2OTJK 3I55K 2QEXK 1WHIA 3OW2J 1VQ6K 5JVGH 3J7YL 3G71K 4WFNH 1VQOK 4WFAH 1YJNK 1QVFJ 4WF9H 2ZJQH 1VQ7K 1YHQK 3CPWJ 5DM6H 4IOAH 1K73L 3CCUK 5DM7H 3G6EK 3CCVK 3G4SK 3DLLH 1YITK 1K8AL 1YI2K 4IOCH 1VQNK 3CCEK 1KC8L 2OTLK 1VQPK 4IO9H 4UY8K 3CF5H 3CCSK 1W2BJ 1KD1L 1Q86L 5GAHL 3CC2K 1M90L 4V19O 3PIPH 3CCQK 1S72K 1YJ9K 1VQLK 1YIJK 3CXCJ 1VQMK 4U67H 2QA4K 5MLCM 5GAGL 4WCEH 5AN9E 3PIOH 1M1KL 1KQSJ 1VQ8K 1Q81L 5GAEL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N8R L;  1JJ2 J;  1K9M L;  5GAD L;  3CME K;  3CMA K;  2ZJR H;  1Q7Y L;  3CCR K;  5H1S M;  2ZJP H;  1VQ4 K;  3CCM K;  3CC7 K;  1YJW K;  1Q82 L;  1QVG J;  3CCL K;  3CC4 K;  1VQK K;  3I56 K;  5JVH H;  3J7Z K;  4WFB H;  1VQ9 K;  3CCJ K;  1NJI L;  1VQ5 K;  5HL7 H;  3CD6 K;  2OTJ K;  3I55 K;  2QEX K;  1WHI A;  3OW2 J;  1VQ6 K;  5JVG H;  3J7Y L;  3G71 K;  4WFN H;  1VQO K;  4WFA H;  1YJN K;  1QVF J;  4WF9 H;  2ZJQ H;  1VQ7 K;  1YHQ K;  3CPW J;  5DM6 H;  4IOA H;  1K73 L;  3CCU K;  5DM7 H;  3G6E K;  3CCV K;  3G4S K;  3DLL H;  1YIT K;  1K8A L;  1YI2 K;  4IOC H;  1VQN K;  3CCE K;  1KC8 L;  2OTL K;  1VQP K;  4IO9 H;  4UY8 K;  3CF5 H;  3CCS K;  1W2B J;  1KD1 L;  1Q86 L;  5GAH L;  3CC2 K;  1M90 L;  4V19 O;  3PIP H;  3CCQ K;  1S72 K;  1YJ9 K;  1VQL K;  1YIJ K;  3CXC J;  1VQM K;  4U67 H;  2QA4 K;  5MLC M;  5GAG L;  4WCE H;  5AN9 E;  3PIO H;  1M1K L;  1KQS J;  1VQ8 K;  1Q81 L;  5GAE L; 
#chains in the Genus database with same CATH topology
 1N8R L;  1JJ2 J;  1K9M L;  5GAD L;  3CME K;  3CMA K;  2ZJR H;  1Q7Y L;  3CCR K;  5H1S M;  2ZJP H;  1VQ4 K;  3CCM K;  3CC7 K;  1YJW K;  1Q82 L;  1QVG J;  3CCL K;  3CC4 K;  1VQK K;  3I56 K;  5JVH H;  3J7Z K;  4WFB H;  1VQ9 K;  3CCJ K;  1NJI L;  1VQ5 K;  5HL7 H;  3CD6 K;  2OTJ K;  3I55 K;  2QEX K;  1WHI A;  3OW2 J;  1VQ6 K;  5JVG H;  3J7Y L;  3G71 K;  4WFN H;  1VQO K;  4WFA H;  1YJN K;  1QVF J;  4WF9 H;  2ZJQ H;  1VQ7 K;  1YHQ K;  3CPW J;  5DM6 H;  4IOA H;  1K73 L;  3CCU K;  5DM7 H;  3G6E K;  3CCV K;  3G4S K;  3DLL H;  1YIT K;  1K8A L;  1YI2 K;  4IOC H;  1VQN K;  3CCE K;  1KC8 L;  2OTL K;  1VQP K;  4IO9 H;  4UY8 K;  3CF5 H;  3CCS K;  1W2B J;  1KD1 L;  1Q86 L;  5GAH L;  3CC2 K;  1M90 L;  4V19 O;  3PIP H;  3CCQ K;  1S72 K;  1YJ9 K;  1VQL K;  1YIJ K;  3CXC J;  1VQM K;  4U67 H;  2QA4 K;  5MLC M;  5GAG L;  4WCE H;  5AN9 E;  3PIO H;  1M1K L;  1KQS J;  1VQ8 K;  1Q81 L;  5GAE L; 
#chains in the Genus database with same CATH homology
 1N8R L;  1JJ2 J;  1K9M L;  5GAD L;  3CME K;  3CMA K;  2ZJR H;  1Q7Y L;  3CCR K;  5H1S M;  2ZJP H;  1VQ4 K;  3CCM K;  3CC7 K;  1YJW K;  1Q82 L;  1QVG J;  3CCL K;  3CC4 K;  1VQK K;  3I56 K;  5JVH H;  3J7Z K;  4WFB H;  1VQ9 K;  3CCJ K;  1NJI L;  1VQ5 K;  5HL7 H;  3CD6 K;  2OTJ K;  3I55 K;  2QEX K;  1WHI A;  3OW2 J;  1VQ6 K;  5JVG H;  3J7Y L;  3G71 K;  4WFN H;  1VQO K;  4WFA H;  1YJN K;  1QVF J;  4WF9 H;  2ZJQ H;  1VQ7 K;  1YHQ K;  3CPW J;  5DM6 H;  4IOA H;  1K73 L;  3CCU K;  5DM7 H;  3G6E K;  3CCV K;  3G4S K;  3DLL H;  1YIT K;  1K8A L;  1YI2 K;  4IOC H;  1VQN K;  3CCE K;  1KC8 L;  2OTL K;  1VQP K;  4IO9 H;  4UY8 K;  3CF5 H;  3CCS K;  1W2B J;  1KD1 L;  1Q86 L;  5GAH L;  3CC2 K;  1M90 L;  4V19 O;  3PIP H;  3CCQ K;  1S72 K;  1YJ9 K;  1VQL K;  1YIJ K;  3CXC J;  1VQM K;  4U67 H;  2QA4 K;  5MLC M;  5GAG L;  4WCE H;  5AN9 E;  3PIO H;  1M1K L;  1KQS J;  1VQ8 K;  1Q81 L;  5GAE L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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