4WF9H

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
122
structure length
122
Chain Sequence
MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKAVIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPEVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-3)S4 (32-33)S2 (6-10)TII1 (3-6)S9 (83-88)EMPTYTIV5 (93-96)TVIII2 (50-53)TII3 (47-50)S5 (37-46)TII2 (34-37)S6 (56-64)TIV2 (65-68)S7 (69-71)TI'1 (71-74)AH1 (104-109)S8 (75-77)TIV4 (88-91)S3 (16-24)TII4 (53-56)AH2 (112-117)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 24
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 4wf9H00
3CC2K 3CCLK 3CMEK 3PIPH 2ZJPH 1KD1L 5JVGH 1M90L 1VQ7K 1S72K 3CD6K 3G6EK 4WFNH 1Q81L 1YIJK 5HL7H 1VQ9K 1JJ2J 4U67H 3CF5H 3J7ZK 1K8AL 3PIOH 2QA4K 5AN9E 1VQ5K 4UY8K 3I55K 1N8RL 3DLLH 3CCUK 1WHIA 1KC8L 4WF9H 3CC4K 4WCEH 4IO9H 1VQ6K 4V19O 1K73L 1VQ4K 1YJWK 3CCVK 5DM7H 3CCJK 3CCRK 2OTLK 5GADL 1VQNK 2OTJK 5DM6H 1K9ML 5GAEL 3CPWJ 5GAHL 3CC7K 2QEXK 2ZJRH 4WFAH 3CXCJ 1VQPK 5MLCM 1YJ9K 1QVGJ 4IOAH 3CCSK 3J7YL 1W2BJ 2ZJQH 3G4SK 3G71K 3CCQK 1M1KL 5JVHH 1KQSJ 1YJNK 1VQKK 1VQOK 1YI2K 1Q86L 1Q7YL 4IOCH 1YITK 3I56K 5H1SM 1YHQK 1QVFJ 3CCMK 4WFBH 1VQLK 3CCEK 1VQMK 1Q82L 3CMAK 1VQ8K 1NJIL 5GAGL 3OW2J
chains in the Genus database with same CATH superfamily
3CC2K 3CCLK 3CMEK 3PIPH 2ZJPH 1KD1L 5JVGH 1M90L 1VQ7K 1S72K 3CD6K 3G6EK 4WFNH 1Q81L 1YIJK 5HL7H 1VQ9K 1JJ2J 4U67H 3CF5H 3J7ZK 1K8AL 3PIOH 2QA4K 5AN9E 1VQ5K 4UY8K 3I55K 1N8RL 3DLLH 3CCUK 1WHIA 1KC8L 4WF9H 3CC4K 4WCEH 4IO9H 1VQ6K 4V19O 1K73L 1VQ4K 1YJWK 3CCVK 5DM7H 3CCJK 3CCRK 2OTLK 5GADL 1VQNK 2OTJK 5DM6H 1K9ML 5GAEL 3CPWJ 5GAHL 3CC7K 2QEXK 2ZJRH 4WFAH 3CXCJ 1VQPK 5MLCM 1YJ9K 1QVGJ 4IOAH 3CCSK 3J7YL 1W2BJ 2ZJQH 3G4SK 3G71K 3CCQK 1M1KL 5JVHH 1KQSJ 1YJNK 1VQKK 1VQOK 1YI2K 1Q86L 1Q7YL 4IOCH 1YITK 3I56K 5H1SM 1YHQK 1QVFJ 3CCMK 4WFBH 1VQLK 3CCEK 1VQMK 1Q82L 3CMAK 1VQ8K 1NJIL 5GAGL 3OW2J
chains in the Genus database with same CATH topology
3CC2K 3CCLK 3CMEK 3PIPH 2ZJPH 1KD1L 5JVGH 1M90L 1VQ7K 1S72K 3CD6K 3G6EK 4WFNH 1Q81L 1YIJK 5HL7H 1VQ9K 1JJ2J 4U67H 3CF5H 3J7ZK 1K8AL 3PIOH 2QA4K 5AN9E 1VQ5K 4UY8K 3I55K 1N8RL 3DLLH 3CCUK 1WHIA 1KC8L 4WF9H 3CC4K 4WCEH 4IO9H 1VQ6K 4V19O 1K73L 1VQ4K 1YJWK 3CCVK 5DM7H 3CCJK 3CCRK 2OTLK 5GADL 1VQNK 2OTJK 5DM6H 1K9ML 5GAEL 3CPWJ 5GAHL 3CC7K 2QEXK 2ZJRH 4WFAH 3CXCJ 1VQPK 5MLCM 1YJ9K 1QVGJ 4IOAH 3CCSK 3J7YL 1W2BJ 2ZJQH 3G4SK 3G71K 3CCQK 1M1KL 5JVHH 1KQSJ 1YJNK 1VQKK 1VQOK 1YI2K 1Q86L 1Q7YL 4IOCH 1YITK 3I56K 5H1SM 1YHQK 1QVFJ 3CCMK 4WFBH 1VQLK 3CCEK 1VQMK 1Q82L 3CMAK 1VQ8K 1NJIL 5GAGL 3OW2J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CC2 K;  3CCL K;  3CME K;  3PIP H;  2ZJP H;  1KD1 L;  5JVG H;  1M90 L;  1VQ7 K;  1S72 K;  3CD6 K;  3G6E K;  4WFN H;  1Q81 L;  1YIJ K;  5HL7 H;  1VQ9 K;  1JJ2 J;  4U67 H;  3CF5 H;  3J7Z K;  1K8A L;  3PIO H;  2QA4 K;  5AN9 E;  1VQ5 K;  4UY8 K;  3I55 K;  1N8R L;  3DLL H;  3CCU K;  1WHI A;  1KC8 L;  4WF9 H;  3CC4 K;  4WCE H;  4IO9 H;  1VQ6 K;  4V19 O;  1K73 L;  1VQ4 K;  1YJW K;  3CCV K;  5DM7 H;  3CCJ K;  3CCR K;  2OTL K;  5GAD L;  1VQN K;  2OTJ K;  5DM6 H;  1K9M L;  5GAE L;  3CPW J;  5GAH L;  3CC7 K;  2QEX K;  2ZJR H;  4WFA H;  3CXC J;  1VQP K;  5MLC M;  1YJ9 K;  1QVG J;  4IOA H;  3CCS K;  3J7Y L;  1W2B J;  2ZJQ H;  3G4S K;  3G71 K;  3CCQ K;  1M1K L;  5JVH H;  1KQS J;  1YJN K;  1VQK K;  1VQO K;  1YI2 K;  1Q86 L;  1Q7Y L;  4IOC H;  1YIT K;  3I56 K;  5H1S M;  1YHQ K;  1QVF J;  3CCM K;  4WFB H;  1VQL K;  3CCE K;  1VQM K;  1Q82 L;  3CMA K;  1VQ8 K;  1NJI L;  5GAG L;  3OW2 J; 
#chains in the Genus database with same CATH topology
 3CC2 K;  3CCL K;  3CME K;  3PIP H;  2ZJP H;  1KD1 L;  5JVG H;  1M90 L;  1VQ7 K;  1S72 K;  3CD6 K;  3G6E K;  4WFN H;  1Q81 L;  1YIJ K;  5HL7 H;  1VQ9 K;  1JJ2 J;  4U67 H;  3CF5 H;  3J7Z K;  1K8A L;  3PIO H;  2QA4 K;  5AN9 E;  1VQ5 K;  4UY8 K;  3I55 K;  1N8R L;  3DLL H;  3CCU K;  1WHI A;  1KC8 L;  4WF9 H;  3CC4 K;  4WCE H;  4IO9 H;  1VQ6 K;  4V19 O;  1K73 L;  1VQ4 K;  1YJW K;  3CCV K;  5DM7 H;  3CCJ K;  3CCR K;  2OTL K;  5GAD L;  1VQN K;  2OTJ K;  5DM6 H;  1K9M L;  5GAE L;  3CPW J;  5GAH L;  3CC7 K;  2QEX K;  2ZJR H;  4WFA H;  3CXC J;  1VQP K;  5MLC M;  1YJ9 K;  1QVG J;  4IOA H;  3CCS K;  3J7Y L;  1W2B J;  2ZJQ H;  3G4S K;  3G71 K;  3CCQ K;  1M1K L;  5JVH H;  1KQS J;  1YJN K;  1VQK K;  1VQO K;  1YI2 K;  1Q86 L;  1Q7Y L;  4IOC H;  1YIT K;  3I56 K;  5H1S M;  1YHQ K;  1QVF J;  3CCM K;  4WFB H;  1VQL K;  3CCE K;  1VQM K;  1Q82 L;  3CMA K;  1VQ8 K;  1NJI L;  5GAG L;  3OW2 J; 
#chains in the Genus database with same CATH homology
 3CC2 K;  3CCL K;  3CME K;  3PIP H;  2ZJP H;  1KD1 L;  5JVG H;  1M90 L;  1VQ7 K;  1S72 K;  3CD6 K;  3G6E K;  4WFN H;  1Q81 L;  1YIJ K;  5HL7 H;  1VQ9 K;  1JJ2 J;  4U67 H;  3CF5 H;  3J7Z K;  1K8A L;  3PIO H;  2QA4 K;  5AN9 E;  1VQ5 K;  4UY8 K;  3I55 K;  1N8R L;  3DLL H;  3CCU K;  1WHI A;  1KC8 L;  4WF9 H;  3CC4 K;  4WCE H;  4IO9 H;  1VQ6 K;  4V19 O;  1K73 L;  1VQ4 K;  1YJW K;  3CCV K;  5DM7 H;  3CCJ K;  3CCR K;  2OTL K;  5GAD L;  1VQN K;  2OTJ K;  5DM6 H;  1K9M L;  5GAE L;  3CPW J;  5GAH L;  3CC7 K;  2QEX K;  2ZJR H;  4WFA H;  3CXC J;  1VQP K;  5MLC M;  1YJ9 K;  1QVG J;  4IOA H;  3CCS K;  3J7Y L;  1W2B J;  2ZJQ H;  3G4S K;  3G71 K;  3CCQ K;  1M1K L;  5JVH H;  1KQS J;  1YJN K;  1VQK K;  1VQO K;  1YI2 K;  1Q86 L;  1Q7Y L;  4IOC H;  1YIT K;  3I56 K;  5H1S M;  1YHQ K;  1QVF J;  3CCM K;  4WFB H;  1VQL K;  3CCE K;  1VQM K;  1Q82 L;  3CMA K;  1VQ8 K;  1NJI L;  5GAG L;  3OW2 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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