5K08 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	142
structure length	142
Chain Sequence	CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHACSP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 142 atoms

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142 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Mycobacterium tuberculosis
publication title	Structural insights into protein splicing inhibition by platinum therapeutics as potential anti-microbials rcsb
molecule keywords	RecA mini intein
total genus	33
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	2016-05-17

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	5k08A00

1GPPA 4OZ6A 1UM2A 4O1RA 1DQ3A 2LWYA 4E2UA 4E2TA 2L8LA 2LQMA 1ZDEA 2IMZA 3IFJA 4KL6A 2CW8A 1DFAA 1LWTA 2KEQA 1LWSA 2CW7A 5I0AA 5K08A 2LCJA 2IN8A 1MI8A 2JMZA 4O1SA 1AM2A 2JNQA 3IGDA 1VDEA 2IN0A 1EF0A 4KL5A 1AT0A 3NZMA 4GIGA 2IN9A 1ZD7A 1JVAA
chains in the Genus database with same CATH superfamily

1GPPA 4OZ6A 1UM2A 4O1RA 4LX3A 1DQ3A 2LWYA 4E2UA 4E2TA 2L8LA 2LQMA 1ZDEA 2IMZA 3IFJA 4KL6A 2CW8A 1DFAA 1LWTA 2KEQA 1LWSA 2CW7A 5I0AA 5K08A 2LCJA 2IN8A 1MI8A 2JMZA 4O1SA 1AM2A 2JNQA 3IGDA 1VDEA 2IN0A 1EF0A 4KL5A 1AT0A 3NZMA 4GIGA 4QFQA 2IN9A 1ZD7A 1JVAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GPP A;  4OZ6 A;  1UM2 A;  4O1R A;  1DQ3 A;  2LWY A;  4E2U A;  4E2T A;  2L8L A;  2LQM A;  1ZDE A;  2IMZ A;  3IFJ A;  4KL6 A;  2CW8 A;  1DFA A;  1LWT A;  2KEQ A;  1LWS A;  2CW7 A;  5I0A A;  5K08 A;  2LCJ A;  2IN8 A;  1MI8 A;  2JMZ A;  4O1S A;  1AM2 A;  2JNQ A;  3IGD A;  1VDE A;  2IN0 A;  1EF0 A;  4KL5 A;  1AT0 A;  3NZM A;  4GIG A;  2IN9 A;  1ZD7 A;  1JVA A; 
#chains in the Genus database with same CATH topology
 1GPP A;  4OZ6 A;  1UM2 A;  4O1R A;  4LX3 A;  1DQ3 A;  2LWY A;  4E2U A;  4E2T A;  2L8L A;  2LQM A;  1ZDE A;  2IMZ A;  3IFJ A;  4KL6 A;  2CW8 A;  1DFA A;  1LWT A;  2KEQ A;  1LWS A;  2CW7 A;  5I0A A;  5K08 A;  2LCJ A;  2IN8 A;  1MI8 A;  2JMZ A;  4O1S A;  1AM2 A;  2JNQ A;  3IGD A;  1VDE A;  2IN0 A;  1EF0 A;  4KL5 A;  1AT0 A;  3NZM A;  4GIG A;  4QFQ A;  2IN9 A;  1ZD7 A;  1JVA A; 
#chains in the Genus database with same CATH homology
 1GPP A;  4OZ6 A;  1UM2 A;  4O1R A;  1DQ3 A;  2LWY A;  4E2U A;  4E2T A;  2L8L A;  2LQM A;  1ZDE A;  2IMZ A;  3IFJ A;  4KL6 A;  2CW8 A;  1DFA A;  1LWT A;  2KEQ A;  1LWS A;  2CW7 A;  5I0A A;  5K08 A;  2LCJ A;  2IN8 A;  1MI8 A;  2JMZ A;  4O1S A;  1AM2 A;  2JNQ A;  3IGD A;  1VDE A;  2IN0 A;  1EF0 A;  4KL5 A;  1AT0 A;  3NZM A;  4GIG A;  2IN9 A;  1ZD7 A;  1JVA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5K08A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN