5MLCM

Cryo-em structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
120
structure length
120
Chain Sequence
MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
molecule tags Ribosome
publication title Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA, chloroplastic
total genus 14
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2016-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 5mlcM00
5H1SM 1VQMK 4V19O 5GAHL 3J7YL 1VQ4K 1VQ7K 3G6EK 4WFBH 1KD1L 3I55K 5DM7H 1M90L 4IOAH 2ZJRH 3CD6K 5GAEL 3CCEK 5GADL 1K73L 1VQ6K 1W2BJ 1Q86L 3CCQK 3PIPH 3CCLK 4WCEH 1YITK 1QVFJ 3PIOH 1Q82L 3J7ZK 3CPWJ 3CCSK 1YHQK 2ZJQH 3CCRK 1M1KL 2QEXK 3OW2J 1YJWK 5JVHH 4IO9H 4WF9H 1YI2K 4U67H 3CC2K 1QVGJ 1VQ9K 3I56K 1VQOK 1YIJK 1Q7YL 2ZJPH 1NJIL 3G4SK 5DM6H 1VQPK 1VQ5K 1YJNK 3CMEK 5MLCM 3CMAK 3CF5H 1KQSJ 2OTLK 4IOCH 1VQLK 4WFNH 2QA4K 1WHIA 1VQKK 1S72K 1K8AL 3CC7K 3DLLH 1VQNK 5JVGH 1VQ8K 1KC8L 3CCMK 3CC4K 3G71K 1K9ML 3CCVK 5AN9E 3CCUK 3CXCJ 1JJ2J 3CCJK 5GAGL 1N8RL 2OTJK 5HL7H 4WFAH 4UY8K 1YJ9K 1Q81L
chains in the Genus database with same CATH superfamily
5H1SM 1VQMK 4V19O 5GAHL 3J7YL 1VQ4K 1VQ7K 3G6EK 4WFBH 1KD1L 3I55K 5DM7H 1M90L 4IOAH 2ZJRH 3CD6K 5GAEL 3CCEK 5GADL 1K73L 1VQ6K 1W2BJ 1Q86L 3CCQK 3PIPH 3CCLK 4WCEH 1YITK 1QVFJ 3PIOH 1Q82L 3J7ZK 3CPWJ 3CCSK 1YHQK 2ZJQH 3CCRK 1M1KL 2QEXK 3OW2J 1YJWK 5JVHH 4IO9H 4WF9H 1YI2K 4U67H 3CC2K 1QVGJ 1VQ9K 3I56K 1VQOK 1YIJK 1Q7YL 2ZJPH 1NJIL 3G4SK 5DM6H 1VQPK 1VQ5K 1YJNK 3CMEK 5MLCM 3CMAK 3CF5H 1KQSJ 2OTLK 4IOCH 1VQLK 4WFNH 2QA4K 1WHIA 1VQKK 1S72K 1K8AL 3CC7K 3DLLH 1VQNK 5JVGH 1VQ8K 1KC8L 3CCMK 3CC4K 3G71K 1K9ML 3CCVK 5AN9E 3CCUK 3CXCJ 1JJ2J 3CCJK 5GAGL 1N8RL 2OTJK 5HL7H 4WFAH 4UY8K 1YJ9K 1Q81L
chains in the Genus database with same CATH topology
5H1SM 1VQMK 4V19O 5GAHL 3J7YL 1VQ4K 1VQ7K 3G6EK 4WFBH 1KD1L 3I55K 5DM7H 1M90L 4IOAH 2ZJRH 3CD6K 5GAEL 3CCEK 5GADL 1K73L 1VQ6K 1W2BJ 1Q86L 3CCQK 3PIPH 3CCLK 4WCEH 1YITK 1QVFJ 3PIOH 1Q82L 3J7ZK 3CPWJ 3CCSK 1YHQK 2ZJQH 3CCRK 1M1KL 2QEXK 3OW2J 1YJWK 5JVHH 4IO9H 4WF9H 1YI2K 4U67H 3CC2K 1QVGJ 1VQ9K 3I56K 1VQOK 1YIJK 1Q7YL 2ZJPH 1NJIL 3G4SK 5DM6H 1VQPK 1VQ5K 1YJNK 3CMEK 5MLCM 3CMAK 3CF5H 1KQSJ 2OTLK 4IOCH 1VQLK 4WFNH 2QA4K 1WHIA 1VQKK 1S72K 1K8AL 3CC7K 3DLLH 1VQNK 5JVGH 1VQ8K 1KC8L 3CCMK 3CC4K 3G71K 1K9ML 3CCVK 5AN9E 3CCUK 3CXCJ 1JJ2J 3CCJK 5GAGL 1N8RL 2OTJK 5HL7H 4WFAH 4UY8K 1YJ9K 1Q81L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H1S M;  1VQM K;  4V19 O;  5GAH L;  3J7Y L;  1VQ4 K;  1VQ7 K;  3G6E K;  4WFB H;  1KD1 L;  3I55 K;  5DM7 H;  1M90 L;  4IOA H;  2ZJR H;  3CD6 K;  5GAE L;  3CCE K;  5GAD L;  1K73 L;  1VQ6 K;  1W2B J;  1Q86 L;  3CCQ K;  3PIP H;  3CCL K;  4WCE H;  1YIT K;  1QVF J;  3PIO H;  1Q82 L;  3J7Z K;  3CPW J;  3CCS K;  1YHQ K;  2ZJQ H;  3CCR K;  1M1K L;  2QEX K;  3OW2 J;  1YJW K;  5JVH H;  4IO9 H;  4WF9 H;  1YI2 K;  4U67 H;  3CC2 K;  1QVG J;  1VQ9 K;  3I56 K;  1VQO K;  1YIJ K;  1Q7Y L;  2ZJP H;  1NJI L;  3G4S K;  5DM6 H;  1VQP K;  1VQ5 K;  1YJN K;  3CME K;  5MLC M;  3CMA K;  3CF5 H;  1KQS J;  2OTL K;  4IOC H;  1VQL K;  4WFN H;  2QA4 K;  1WHI A;  1VQK K;  1S72 K;  1K8A L;  3CC7 K;  3DLL H;  1VQN K;  5JVG H;  1VQ8 K;  1KC8 L;  3CCM K;  3CC4 K;  3G71 K;  1K9M L;  3CCV K;  5AN9 E;  3CCU K;  3CXC J;  1JJ2 J;  3CCJ K;  5GAG L;  1N8R L;  2OTJ K;  5HL7 H;  4WFA H;  4UY8 K;  1YJ9 K;  1Q81 L; 
#chains in the Genus database with same CATH topology
 5H1S M;  1VQM K;  4V19 O;  5GAH L;  3J7Y L;  1VQ4 K;  1VQ7 K;  3G6E K;  4WFB H;  1KD1 L;  3I55 K;  5DM7 H;  1M90 L;  4IOA H;  2ZJR H;  3CD6 K;  5GAE L;  3CCE K;  5GAD L;  1K73 L;  1VQ6 K;  1W2B J;  1Q86 L;  3CCQ K;  3PIP H;  3CCL K;  4WCE H;  1YIT K;  1QVF J;  3PIO H;  1Q82 L;  3J7Z K;  3CPW J;  3CCS K;  1YHQ K;  2ZJQ H;  3CCR K;  1M1K L;  2QEX K;  3OW2 J;  1YJW K;  5JVH H;  4IO9 H;  4WF9 H;  1YI2 K;  4U67 H;  3CC2 K;  1QVG J;  1VQ9 K;  3I56 K;  1VQO K;  1YIJ K;  1Q7Y L;  2ZJP H;  1NJI L;  3G4S K;  5DM6 H;  1VQP K;  1VQ5 K;  1YJN K;  3CME K;  5MLC M;  3CMA K;  3CF5 H;  1KQS J;  2OTL K;  4IOC H;  1VQL K;  4WFN H;  2QA4 K;  1WHI A;  1VQK K;  1S72 K;  1K8A L;  3CC7 K;  3DLL H;  1VQN K;  5JVG H;  1VQ8 K;  1KC8 L;  3CCM K;  3CC4 K;  3G71 K;  1K9M L;  3CCV K;  5AN9 E;  3CCU K;  3CXC J;  1JJ2 J;  3CCJ K;  5GAG L;  1N8R L;  2OTJ K;  5HL7 H;  4WFA H;  4UY8 K;  1YJ9 K;  1Q81 L; 
#chains in the Genus database with same CATH homology
 5H1S M;  1VQM K;  4V19 O;  5GAH L;  3J7Y L;  1VQ4 K;  1VQ7 K;  3G6E K;  4WFB H;  1KD1 L;  3I55 K;  5DM7 H;  1M90 L;  4IOA H;  2ZJR H;  3CD6 K;  5GAE L;  3CCE K;  5GAD L;  1K73 L;  1VQ6 K;  1W2B J;  1Q86 L;  3CCQ K;  3PIP H;  3CCL K;  4WCE H;  1YIT K;  1QVF J;  3PIO H;  1Q82 L;  3J7Z K;  3CPW J;  3CCS K;  1YHQ K;  2ZJQ H;  3CCR K;  1M1K L;  2QEX K;  3OW2 J;  1YJW K;  5JVH H;  4IO9 H;  4WF9 H;  1YI2 K;  4U67 H;  3CC2 K;  1QVG J;  1VQ9 K;  3I56 K;  1VQO K;  1YIJ K;  1Q7Y L;  2ZJP H;  1NJI L;  3G4S K;  5DM6 H;  1VQP K;  1VQ5 K;  1YJN K;  3CME K;  5MLC M;  3CMA K;  3CF5 H;  1KQS J;  2OTL K;  4IOC H;  1VQL K;  4WFN H;  2QA4 K;  1WHI A;  1VQK K;  1S72 K;  1K8A L;  3CC7 K;  3DLL H;  1VQN K;  5JVG H;  1VQ8 K;  1KC8 L;  3CCM K;  3CC4 K;  3G71 K;  1K9M L;  3CCV K;  5AN9 E;  3CCU K;  3CXC J;  1JJ2 J;  3CCJ K;  5GAG L;  1N8R L;  2OTJ K;  5HL7 H;  4WFA H;  4UY8 K;  1YJ9 K;  1Q81 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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