1EJSA

Crystal structure of the h219n variant of klebsiella aerogenes urease
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Klebsiella aerogenes
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
molecule keywords UREASE ALPHA SUBUNIT
total genus 28
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejsA00
4G7EB 1A5NA 1A5MA 1FWCA 1FWJA 4EPBA 4H9MA 1FWAA 1S3TA 4CEXA 2UBPA 1EJVA 4AC7A 5FSDA 1E9YA 3QGKA 3UBPA 1A5LA 4GOAA 1FWEA 4EPEA 1EF2C 2FVHA 4EP8A 1FWGA 1EJWA 1FWHA 1IE7A 3QGAA 1FWBA 1A5KA 1EJXA 1FWDA 4G7EA 1UBPA 4EPDA 2KAUA 1FWFA 1FWIA 4FURA 5FSEA 1E9ZA 1KRBA 3LA4A 4Z42A 1EJRA 1EJTA 4UBPA 1A5OA 5A6TA 1EJUA 4GY7A 5G4HA 4CEUA 1KRCA 1KRAA 1EJSA
chains in the Genus database with same CATH superfamily
4G7EB 1A5NA 1A5MA 1FWCA 1FWJA 4EPBA 4H9MA 1FWAA 1S3TA 4CEXA 2UBPA 1EJVA 4AC7A 5FSDA 1E9YA 3QGKA 3UBPA 1A5LA 4GOAA 1FWEA 4EPEA 1EF2C 2FVHA 4EP8A 1FWGA 1EJWA 1FWHA 1IE7A 3QGAA 1FWBA 1A5KA 1EJXA 1FWDA 4G7EA 1UBPA 4EPDA 2KAUA 1FWFA 1FWIA 4FURA 5FSEA 1E9ZA 1KRBA 3LA4A 4Z42A 1EJRA 1EJTA 4UBPA 1A5OA 5A6TA 1EJUA 4GY7A 5G4HA 4CEUA 1KRCA 1KRAA 1EJSA
chains in the Genus database with same CATH topology
4G7EB 1A5NA 1A5MA 1FWCA 1FWJA 4EPBA 4H9MA 1FWAA 1S3TA 4CEXA 2UBPA 1EJVA 4AC7A 5FSDA 1E9YA 3QGKA 3UBPA 1A5LA 4GOAA 1FWEA 4EPEA 1EF2C 2FVHA 4EP8A 1FWGA 1EJWA 1FWHA 1IE7A 3QGAA 1FWBA 1A5KA 1EJXA 1FWDA 4G7EA 1UBPA 4EPDA 2KAUA 1FWFA 1FWIA 4FURA 5FSEA 1E9ZA 1KRBA 3LA4A 4Z42A 1EJRA 1EJTA 4UBPA 1A5OA 5A6TA 1EJUA 4GY7A 5G4HA 4CEUA 1KRCA 1KRAA 1EJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G7E B;  1A5N A;  1A5M A;  1FWC A;  1FWJ A;  4EPB A;  4H9M A;  1FWA A;  1S3T A;  4CEX A;  2UBP A;  1EJV A;  4AC7 A;  5FSD A;  1E9Y A;  3QGK A;  3UBP A;  1A5L A;  4GOA A;  1FWE A;  4EPE A;  1EF2 C;  2FVH A;  4EP8 A;  1FWG A;  1EJW A;  1FWH A;  1IE7 A;  3QGA A;  1FWB A;  1A5K A;  1EJX A;  1FWD A;  4G7E A;  1UBP A;  4EPD A;  2KAU A;  1FWF A;  1FWI A;  4FUR A;  5FSE A;  1E9Z A;  1KRB A;  3LA4 A;  4Z42 A;  1EJR A;  1EJT A;  4UBP A;  1A5O A;  5A6T A;  1EJU A;  4GY7 A;  5G4H A;  4CEU A;  1KRC A;  1KRA A;  1EJS A; 
#chains in the Genus database with same CATH topology
 4G7E B;  1A5N A;  1A5M A;  1FWC A;  1FWJ A;  4EPB A;  4H9M A;  1FWA A;  1S3T A;  4CEX A;  2UBP A;  1EJV A;  4AC7 A;  5FSD A;  1E9Y A;  3QGK A;  3UBP A;  1A5L A;  4GOA A;  1FWE A;  4EPE A;  1EF2 C;  2FVH A;  4EP8 A;  1FWG A;  1EJW A;  1FWH A;  1IE7 A;  3QGA A;  1FWB A;  1A5K A;  1EJX A;  1FWD A;  4G7E A;  1UBP A;  4EPD A;  2KAU A;  1FWF A;  1FWI A;  4FUR A;  5FSE A;  1E9Z A;  1KRB A;  3LA4 A;  4Z42 A;  1EJR A;  1EJT A;  4UBP A;  1A5O A;  5A6T A;  1EJU A;  4GY7 A;  5G4H A;  4CEU A;  1KRC A;  1KRA A;  1EJS A; 
#chains in the Genus database with same CATH homology
 4G7E B;  1A5N A;  1A5M A;  1FWC A;  1FWJ A;  4EPB A;  4H9M A;  1FWA A;  1S3T A;  4CEX A;  2UBP A;  1EJV A;  4AC7 A;  5FSD A;  1E9Y A;  3QGK A;  3UBP A;  1A5L A;  4GOA A;  1FWE A;  4EPE A;  1EF2 C;  2FVH A;  4EP8 A;  1FWG A;  1EJW A;  1FWH A;  1IE7 A;  3QGA A;  1FWB A;  1A5K A;  1EJX A;  1FWD A;  4G7E A;  1UBP A;  4EPD A;  2KAU A;  1FWF A;  1FWI A;  4FUR A;  5FSE A;  1E9Z A;  1KRB A;  3LA4 A;  4Z42 A;  1EJR A;  1EJT A;  4UBP A;  1A5O A;  5A6T A;  1EJU A;  4GY7 A;  5G4H A;  4CEU A;  1KRC A;  1KRA A;  1EJS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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