1L3A | Genus

Total Genus 33

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	166
structure length	166
Chain Sequence	TPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A new family of plant transcription factors displays a novel ssDNA-binding surface. pubmed doi rcsb
molecule keywords	p24: plant transcriptional regulator PBF-2
molecule tags	Dna binding protein
source organism	Solanum tuberosum
total genus	33
structure length	166
sequence length	166
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2002-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08536	Whirly	Whirly transcription factor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	1l3aA00

4BG7A 3N1KA 4AGHA 3N1LA 4USGA 3R9YA 2NVNA 4KOOA 4KOQA 2IT9A 2C62A 1L3AA 4KOPA 2PHEA 3N1HA 3R9ZA 3N1IA 3RA0A 4BHMA 1PCFA 3N1JA
chains in the Genus database with same CATH superfamily

4BXMA 4BG7A 3K44A 3N1KA 2GJED 3OBHA 4AGHA 3N1LA 4USGA 3R9YA 2GJEA 4BODA 2NVNA 4KOOA 4KOQA 2GIDA 2IT9A 2C62A 1L3AA 2M4FA 5FGPA 4KOPA 2GIAA 2PHEA 3N1HA 3R9ZA 4BOBA 2GIDB 4BF3A 3N1IA 3RA0A 4BHMA 4J38A 1PCFA 3N1JA 2GIAB 3MTVA 3CM1A
chains in the Genus database with same CATH topology

4BG7A 3N1KA 4AGHA 3N1LA 4USGA 3R9YA 2NVNA 4KOOA 4KOQA 2IT9A 2C62A 1L3AA 4KOPA 2PHEA 3N1HA 3R9ZA 3N1IA 3RA0A 4BHMA 1PCFA 3N1JA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4BG7 A;  3N1K A;  4AGH A;  3N1L A;  4USG A;  3R9Y A;  2NVN A;  4KOO A;  4KOQ A;  2IT9 A;  2C62 A;  1L3A A;  4KOP A;  2PHE A;  3N1H A;  3R9Z A;  3N1I A;  3RA0 A;  4BHM A;  1PCF A;  3N1J A; 
#chains in the Genus database with same CATH topology
 4BXM A;  4BG7 A;  3K44 A;  3N1K A;  2GJE D;  3OBH A;  4AGH A;  3N1L A;  4USG A;  3R9Y A;  2GJE A;  4BOD A;  2NVN A;  4KOO A;  4KOQ A;  2GID A;  2IT9 A;  2C62 A;  1L3A A;  2M4F A;  5FGP A;  4KOP A;  2GIA A;  2PHE A;  3N1H A;  3R9Z A;  4BOB A;  2GID B;  4BF3 A;  3N1I A;  3RA0 A;  4BHM A;  4J38 A;  1PCF A;  3N1J A;  2GIA B;  3MTV A;  3CM1 A; 
#chains in the Genus database with same CATH homology
 4BG7 A;  3N1K A;  4AGH A;  3N1L A;  4USG A;  3R9Y A;  2NVN A;  4KOO A;  4KOQ A;  2IT9 A;  2C62 A;  1L3A A;  4KOP A;  2PHE A;  3N1H A;  3R9Z A;  3N1I A;  3RA0 A;  4BHM A;  1PCF A;  3N1J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1L3AA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations