1PCF | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	66
structure length	66
Chain Sequence	AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__770476786180736__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__770476786180736__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1PCF/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__770476786180736__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"770476786180736","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1PCF/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__770476786180736__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	C-terminal domain of transcription cofactor PC4 reveals dimeric ssDNA binding site. pubmed doi rcsb
molecule keywords	TRANSCRIPTIONAL COACTIVATOR PC4
molecule tags	Transcription
source organism	Homo sapiens
total genus	16
structure length	66
sequence length	66
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	1997-09-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02229	PC4	Transcriptional Coactivator p15 (PC4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	1pcfA00

1L3AA 2IT9A 3N1KA 2PHEA 4KOQA 1PCFA 4KOOA 4USGA 3N1JA 4BHMA 2C62A 4AGHA 3RA0A 2NVNA 3R9ZA 4KOPA 4BG7A 3N1IA 3N1LA 3R9YA 3N1HA
chains in the Genus database with same CATH superfamily

1L3AA 2IT9A 4BXMA 3N1KA 2GIDA 2PHEA 3MTVA 4KOQA 1PCFA 3K44A 3OBHA 4BF3A 5FGPA 2GIAA 4KOOA 2GJED 4USGA 3N1JA 4BHMA 4BOBA 3CM1A 2C62A 4AGHA 3RA0A 2NVNA 2GJEA 4BODA 3R9ZA 2GIDB 4KOPA 4J38A 4BG7A 3N1IA 3N1LA 3R9YA 2M4FA 3N1HA 2GIAB
chains in the Genus database with same CATH topology

1L3AA 2IT9A 3N1KA 2PHEA 4KOQA 1PCFA 4KOOA 4USGA 3N1JA 4BHMA 2C62A 4AGHA 3RA0A 2NVNA 3R9ZA 4KOPA 4BG7A 3N1IA 3N1LA 3R9YA 3N1HA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1L3A A;  2IT9 A;  3N1K A;  2PHE A;  4KOQ A;  1PCF A;  4KOO A;  4USG A;  3N1J A;  4BHM A;  2C62 A;  4AGH A;  3RA0 A;  2NVN A;  3R9Z A;  4KOP A;  4BG7 A;  3N1I A;  3N1L A;  3R9Y A;  3N1H A; 
#chains in the Genus database with same CATH topology
 1L3A A;  2IT9 A;  4BXM A;  3N1K A;  2GID A;  2PHE A;  3MTV A;  4KOQ A;  1PCF A;  3K44 A;  3OBH A;  4BF3 A;  5FGP A;  2GIA A;  4KOO A;  2GJE D;  4USG A;  3N1J A;  4BHM A;  4BOB A;  3CM1 A;  2C62 A;  4AGH A;  3RA0 A;  2NVN A;  2GJE A;  4BOD A;  3R9Z A;  2GID B;  4KOP A;  4J38 A;  4BG7 A;  3N1I A;  3N1L A;  3R9Y A;  2M4F A;  3N1H A;  2GIA B; 
#chains in the Genus database with same CATH homology
 1L3A A;  2IT9 A;  3N1K A;  2PHE A;  4KOQ A;  1PCF A;  4KOO A;  4USG A;  3N1J A;  4BHM A;  2C62 A;  4AGH A;  3RA0 A;  2NVN A;  3R9Z A;  4KOP A;  4BG7 A;  3N1I A;  3N1L A;  3R9Y A;  3N1H A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1PCFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations