1PYCA

Cyp1 (hap1) dna-binding domain (residues 60-100), nmr, 15 structures
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
41
structure length
41
Chain Sequence
IPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title 1H, 15N resonance assignment and three-dimensional structure of CYP1 (HAP1) DNA-binding domain.
pubmed doi rcsb
molecule tags Transcription regulation
molecule keywords CYP1
total genus 4
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 1996-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 1pycA00
1AW6A 1PYIA 2ALCA 1PYCA 2HAPC 2ERGA 1F5EP 1QP9A 3ALCA 1HWTC 1AJYA 3COQA 2ER8A 1F4SP 2EREA 1D66A 1ZMEC
chains in the Genus database with same CATH superfamily
1AW6A 1PYIA 2ALCA 1PYCA 2HAPC 2ERGA 1F5EP 1QP9A 3ALCA 1HWTC 1AJYA 3COQA 2ER8A 1F4SP 2EREA 1D66A 1ZMEC
chains in the Genus database with same CATH topology
1AW6A 1PYIA 2ALCA 1PYCA 2HAPC 2ERGA 1F5EP 1QP9A 3ALCA 1HWTC 1AJYA 3COQA 2ER8A 1F4SP 2EREA 1D66A 1ZMEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AW6 A;  1PYI A;  2ALC A;  1PYC A;  2HAP C;  2ERG A;  1F5E P;  1QP9 A;  3ALC A;  1HWT C;  1AJY A;  3COQ A;  2ER8 A;  1F4S P;  2ERE A;  1D66 A;  1ZME C; 
#chains in the Genus database with same CATH topology
 1AW6 A;  1PYI A;  2ALC A;  1PYC A;  2HAP C;  2ERG A;  1F5E P;  1QP9 A;  3ALC A;  1HWT C;  1AJY A;  3COQ A;  2ER8 A;  1F4S P;  2ERE A;  1D66 A;  1ZME C; 
#chains in the Genus database with same CATH homology
 1AW6 A;  1PYI A;  2ALC A;  1PYC A;  2HAP C;  2ERG A;  1F5E P;  1QP9 A;  3ALC A;  1HWT C;  1AJY A;  3COQ A;  2ER8 A;  1F4S P;  2ERE A;  1D66 A;  1ZME C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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