1PYIA

Crystal structure of a ppr1-dna complex: dna recognition by proteins containing a zn2cys6 binuclear cluster
Total Genus 16
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
88
structure length
88
Chain Sequence
SRTACKRCRLKKIKCDQEFPSCKRCAKLEVPCVSLDPATGKDVPRSYVFFLEDRLAVMMRVLKEYGVDPTKIRGNIPATSDDEPFDLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of a PPR1-DNA complex: DNA recognition by proteins containing a Zn2Cys6 binuclear cluster.
pubmed rcsb
molecule tags Transcription/dna
source organism Saccharomyces cerevisiae
molecule keywords DNA (5'-D(*TP*CP*GP*GP*CP*AP*AP*TP*TP*GP*CP*CP*GP*A)-3')
total genus 16
structure length 88
sequence length 88
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 1pyiA01
1PYIA 2EREA 3ALCA 2ALCA 3COQA 1QP9A 2ERGA 2ER8A 1ZMEC 2HAPC 1F5EP 1D66A 1PYCA 1F4SP 1AJYA 1HWTC 1AW6A
chains in the Genus database with same CATH superfamily
1PYIA 2EREA 3ALCA 2ALCA 3COQA 1QP9A 2ERGA 2ER8A 1ZMEC 2HAPC 1F5EP 1D66A 1PYCA 1F4SP 1AJYA 1HWTC 1AW6A
chains in the Genus database with same CATH topology
1PYIA 2EREA 3ALCA 2ALCA 3COQA 1QP9A 2ERGA 2ER8A 1ZMEC 2HAPC 1F5EP 1D66A 1PYCA 1F4SP 1AJYA 1HWTC 1AW6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PYI A;  2ERE A;  3ALC A;  2ALC A;  3COQ A;  1QP9 A;  2ERG A;  2ER8 A;  1ZME C;  2HAP C;  1F5E P;  1D66 A;  1PYC A;  1F4S P;  1AJY A;  1HWT C;  1AW6 A; 
#chains in the Genus database with same CATH topology
 1PYI A;  2ERE A;  3ALC A;  2ALC A;  3COQ A;  1QP9 A;  2ERG A;  2ER8 A;  1ZME C;  2HAP C;  1F5E P;  1D66 A;  1PYC A;  1F4S P;  1AJY A;  1HWT C;  1AW6 A; 
#chains in the Genus database with same CATH homology
 1PYI A;  2ERE A;  3ALC A;  2ALC A;  3COQ A;  1QP9 A;  2ERG A;  2ER8 A;  1ZME C;  2HAP C;  1F5E P;  1D66 A;  1PYC A;  1F4S P;  1AJY A;  1HWT C;  1AW6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...