1T57A

Crystal structure of the conserved protein mth1675 from methanobacterium thermoautotrophicum
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
186
structure length
186
Chain Sequence
MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHMNSVFDLRIHEVIAMPRP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS6 (176-182)TIV5 (153-156)TVIII1 (8-11)3H1 (13-15)3H4 (172-174)AH1 (16-30)S1 (34-38)AH2 (43-50)S2 (55-59)TI1 (39-42)TII2 (67-70)TII1 (62-65)AH5 (124-133)TI2 (93-96)AH4 (98-106)TIV2 (94-97)3H2 (111-117)TI3 (117-120)TIV4 (143-146)S4 (148-152)S5 (160-165)TIV6 (167-171)S3 (87-89)TIV3 (120-124)AH3 (75-84)3H3 (134-139)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Methanothermobacter thermautotrophicus
publication title Crystal Structure of the Conserved Protein MTH1675 from Methanobacterium thermoautotrophicum
rcsb
molecule keywords Conserved Protein MTH1675
total genus 48
structure length 186
sequence length 186
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02887 PK_C Pyruvate kinase, alpha/beta domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase; Chain: A, domain 1 Pyruvate kinase, C-terminal domain 1t57A00
4B2DD 3GG8A 3IS4A 1PKYA 3N25A 1AQFA 3PP7A 3T07A 3SRFA 2E28A 4HYWA 1VP8A 3SRKA 4FXFA 3QV8A 4JPGA 1PKMA 4KCTA 4G1NA 1PKNA 2VGGA 3E0WA 4IMAA 3KTXA 3GR4A 4RPPA 4KCVA 3T0TA 3U2ZA 3T05A 4B2DA 3MA8A 1E0UA 2G50A 3GQYA 4HYVA 4QG6A 1T5AA 3BJFA 1A49A 3EOEA 3QTGA 3QV6A 1A3XA 1A5UA 2VGBA 1PKLA 3KHDA 3SRDA 2VGFA 1F3XA 4QG8A 3HQNA 4FXJA 3QV9A 1A3WA 3G2GA 1E0TA 1T57A 3BJTA 3H6OA 4QGCA 3SRHA 1F3WA 4KCWA 3E0VA 1ZJHA 4YJ5A 3HQPA 3HQOA 4KRZA 4KS0A 4QG9A 4DRSA 4YNGA 3ME3A 2VGIA 3QV7A 4KCUA 4IP7A 4WJ8A
chains in the Genus database with same CATH superfamily
3FKSG 4TSFG 4B2DD 3GG8A 3IS4A 1PKYA 3N25A 1AQFA 3PP7A 2HLDG 3T07A 3SRFA 2E28A 5DN6G 4HYWA 1VP8A 1W0JG 3SRKA 4FXFA 3QV8A 4JPGA 1PKMA 4KCTA 4G1NA 1PKNA 2VGGA 3ZIAG 3OEEG 3OEHG 3E0WA 4IMAA 3KTXA 3GR4A 4RPPA 5FL7G 4KCVA 4TT3G 3T0TA 3U2ZA 3T05A 4B2DA 3MA8A 1E79G 1E0UA 2G50A 3OE7G 3GQYA 4HYVA 2JJ2G 4QG6A 4ASUG 2CK3G 1T5AA 3BJFA 1A49A 3EOEA 3QTGA 2JDIG 2WSSG 3QV6A 1A3XA 1A5UA 2VGBA 2XOKG 1PKLA 3AAGA 3KHDA 3SRDA 2VGFA 2WPDG 4Z1MG 3OAAG 1F3XA 4QG8A 3HQNA 4FXJA 3QV9A 1A3WA 2XNDG 1FS0G 2W6IG 3G2GA 1E0TA 1T57A 3BJTA 3H6OA 4QGCA 4YXWG 3SRHA 1F3WA 2V7QG 1H8EG 2QE7G 4KCWA 3OFNG 3E0VA 1ZJHA 4YJ5A 3HQPA 3HQOA 4KRZA 4KS0A 4QG9A 4DRSA 4YNGA 2W6JG 3ME3A 2VGIA 2JJ1G 2JIZG 3QV7A 4KCUA 4IP7A 4WJ8A
chains in the Genus database with same CATH topology
4B2DD 3GG8A 3IS4A 1PKYA 3N25A 1AQFA 3PP7A 3T07A 3SRFA 2E28A 4HYWA 1VP8A 3SRKA 4FXFA 3QV8A 4JPGA 1PKMA 4KCTA 4G1NA 1PKNA 2VGGA 3E0WA 4IMAA 3KTXA 3GR4A 4RPPA 4KCVA 3T0TA 3U2ZA 3T05A 4B2DA 3MA8A 1E0UA 2G50A 3GQYA 4HYVA 4QG6A 1T5AA 3BJFA 1A49A 3EOEA 3QTGA 3QV6A 1A3XA 1A5UA 2VGBA 1PKLA 3KHDA 3SRDA 2VGFA 1F3XA 4QG8A 3HQNA 4FXJA 3QV9A 1A3WA 3G2GA 1E0TA 1T57A 3BJTA 3H6OA 4QGCA 3SRHA 1F3WA 4KCWA 3E0VA 1ZJHA 4YJ5A 3HQPA 3HQOA 4KRZA 4KS0A 4QG9A 4DRSA 4YNGA 3ME3A 2VGIA 3QV7A 4KCUA 4IP7A 4WJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B2D D;  3GG8 A;  3IS4 A;  1PKY A;  3N25 A;  1AQF A;  3PP7 A;  3T07 A;  3SRF A;  2E28 A;  4HYW A;  1VP8 A;  3SRK A;  4FXF A;  3QV8 A;  4JPG A;  1PKM A;  4KCT A;  4G1N A;  1PKN A;  2VGG A;  3E0W A;  4IMA A;  3KTX A;  3GR4 A;  4RPP A;  4KCV A;  3T0T A;  3U2Z A;  3T05 A;  4B2D A;  3MA8 A;  1E0U A;  2G50 A;  3GQY A;  4HYV A;  4QG6 A;  1T5A A;  3BJF A;  1A49 A;  3EOE A;  3QTG A;  3QV6 A;  1A3X A;  1A5U A;  2VGB A;  1PKL A;  3KHD A;  3SRD A;  2VGF A;  1F3X A;  4QG8 A;  3HQN A;  4FXJ A;  3QV9 A;  1A3W A;  3G2G A;  1E0T A;  1T57 A;  3BJT A;  3H6O A;  4QGC A;  3SRH A;  1F3W A;  4KCW A;  3E0V A;  1ZJH A;  4YJ5 A;  3HQP A;  3HQO A;  4KRZ A;  4KS0 A;  4QG9 A;  4DRS A;  4YNG A;  3ME3 A;  2VGI A;  3QV7 A;  4KCU A;  4IP7 A;  4WJ8 A; 
#chains in the Genus database with same CATH topology
 3FKS G;  4TSF G;  4B2D D;  3GG8 A;  3IS4 A;  1PKY A;  3N25 A;  1AQF A;  3PP7 A;  2HLD G;  3T07 A;  3SRF A;  2E28 A;  5DN6 G;  4HYW A;  1VP8 A;  1W0J G;  3SRK A;  4FXF A;  3QV8 A;  4JPG A;  1PKM A;  4KCT A;  4G1N A;  1PKN A;  2VGG A;  3ZIA G;  3OEE G;  3OEH G;  3E0W A;  4IMA A;  3KTX A;  3GR4 A;  4RPP A;  5FL7 G;  4KCV A;  4TT3 G;  3T0T A;  3U2Z A;  3T05 A;  4B2D A;  3MA8 A;  1E79 G;  1E0U A;  2G50 A;  3OE7 G;  3GQY A;  4HYV A;  2JJ2 G;  4QG6 A;  4ASU G;  2CK3 G;  1T5A A;  3BJF A;  1A49 A;  3EOE A;  3QTG A;  2JDI G;  2WSS G;  3QV6 A;  1A3X A;  1A5U A;  2VGB A;  2XOK G;  1PKL A;  3AAG A;  3KHD A;  3SRD A;  2VGF A;  2WPD G;  4Z1M G;  3OAA G;  1F3X A;  4QG8 A;  3HQN A;  4FXJ A;  3QV9 A;  1A3W A;  2XND G;  1FS0 G;  2W6I G;  3G2G A;  1E0T A;  1T57 A;  3BJT A;  3H6O A;  4QGC A;  4YXW G;  3SRH A;  1F3W A;  2V7Q G;  1H8E G;  2QE7 G;  4KCW A;  3OFN G;  3E0V A;  1ZJH A;  4YJ5 A;  3HQP A;  3HQO A;  4KRZ A;  4KS0 A;  4QG9 A;  4DRS A;  4YNG A;  2W6J G;  3ME3 A;  2VGI A;  2JJ1 G;  2JIZ G;  3QV7 A;  4KCU A;  4IP7 A;  4WJ8 A; 
#chains in the Genus database with same CATH homology
 4B2D D;  3GG8 A;  3IS4 A;  1PKY A;  3N25 A;  1AQF A;  3PP7 A;  3T07 A;  3SRF A;  2E28 A;  4HYW A;  1VP8 A;  3SRK A;  4FXF A;  3QV8 A;  4JPG A;  1PKM A;  4KCT A;  4G1N A;  1PKN A;  2VGG A;  3E0W A;  4IMA A;  3KTX A;  3GR4 A;  4RPP A;  4KCV A;  3T0T A;  3U2Z A;  3T05 A;  4B2D A;  3MA8 A;  1E0U A;  2G50 A;  3GQY A;  4HYV A;  4QG6 A;  1T5A A;  3BJF A;  1A49 A;  3EOE A;  3QTG A;  3QV6 A;  1A3X A;  1A5U A;  2VGB A;  1PKL A;  3KHD A;  3SRD A;  2VGF A;  1F3X A;  4QG8 A;  3HQN A;  4FXJ A;  3QV9 A;  1A3W A;  3G2G A;  1E0T A;  1T57 A;  3BJT A;  3H6O A;  4QGC A;  3SRH A;  1F3W A;  4KCW A;  3E0V A;  1ZJH A;  4YJ5 A;  3HQP A;  3HQO A;  4KRZ A;  4KS0 A;  4QG9 A;  4DRS A;  4YNG A;  3ME3 A;  2VGI A;  3QV7 A;  4KCU A;  4IP7 A;  4WJ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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