1VP8A

Crystal structure of an alpha/beta domain of a putative pyruvate kinase (af0103) from archaeoglobus fulgidus dsm 4304 at 1.30 a resolution
Total Genus 54
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
190
structure length
190
Chain Sequence
HMEKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGGRSRGADTAVVIRPAHMNNFFDAEIKEIICMPRNKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (13-15)TVIII1 (8-11)EMPTYTIV4 (154-157)TI2 (42-45)AH1 (16-30)3H4 (173-175)TI'1 (52-55)S1 (34-38)3H2 (45-48)TI1 (39-42)TII2 (68-71)TIV1 (48-52)AH2 (76-85)S2 (56-60)TII1 (63-66)S3 (88-90)3H3 (136-139)TI3 (94-97)TIV3 (95-98)AH3 (99-107)AH4 (112-124)S6 (177-183)AH5 (126-135)S5 (161-166)S4 (149-153)TIV5 (168-172)TVIII2 (66-69)Updating...
connected with : NaN
molecule tags Flavoprotein
source organism Archaeoglobus fulgidus
publication title Crystal structure of hypothetical protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution
rcsb
molecule keywords hypothetical protein AF0103
total genus 54
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2004-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02887 PK_C Pyruvate kinase, alpha/beta domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase; Chain: A, domain 1 Pyruvate kinase, C-terminal domain 1vp8A00
1A3XA 3PP7A 4YJ5A 3BJFA 4KCUA 1E0UA 3BJTA 3HQPA 3QV8A 4QG8A 1PKLA 1F3WA 4HYWA 1T5AA 3GR4A 3GQYA 4QG6A 3SRHA 3MA8A 4WJ8A 1A5UA 2G50A 4QG9A 3T07A 1PKYA 1A49A 4RPPA 3U2ZA 2E28A 4KCTA 3HQNA 3T05A 4G1NA 2VGGA 4KCWA 3SRKA 3GG8A 3KTXA 4KCVA 3QV6A 1ZJHA 1VP8A 1E0TA 1AQFA 3E0WA 3HQOA 3KHDA 4KRZA 4IMAA 4YNGA 1T57A 3SRDA 4HYVA 2VGIA 3H6OA 4KS0A 3T0TA 4QGCA 3QTGA 3E0VA 3EOEA 3QV9A 4IP7A 2VGFA 3SRFA 1PKMA 1PKNA 3G2GA 3IS4A 4B2DD 3ME3A 4DRSA 2VGBA 3QV7A 3N25A 4B2DA 4FXJA 4FXFA 1F3XA 4JPGA 1A3WA
chains in the Genus database with same CATH superfamily
1A3XA 3PP7A 4TT3G 4YJ5A 3BJFA 4KCUA 2JDIG 1E0UA 3BJTA 3HQPA 3QV8A 4QG8A 4ASUG 1PKLA 1F3WA 4HYWA 1T5AA 3GR4A 1H8EG 3GQYA 4QG6A 3SRHA 3MA8A 4WJ8A 4TSFG 3OAAG 1A5UA 2G50A 4QG9A 3T07A 1PKYA 2W6JG 1A49A 3ZIAG 2WSSG 2W6IG 4RPPA 3U2ZA 2E28A 4KCTA 5FL7G 3HQNA 3T05A 4G1NA 2XNDG 2VGGA 4KCWA 1E79G 3OFNG 3SRKA 4Z1MG 3GG8A 1FS0G 3KTXA 4KCVA 2HLDG 1W0JG 2QE7G 2XOKG 2JJ2G 3FKSG 3QV6A 3AAGA 1ZJHA 1VP8A 1E0TA 1AQFA 3E0WA 3OEEG 2JIZG 3HQOA 3KHDA 4KRZA 4IMAA 4YNGA 1T57A 4YXWG 3SRDA 4HYVA 2VGIA 3H6OA 4KS0A 3T0TA 4QGCA 3QTGA 3OE7G 3E0VA 3EOEA 3QV9A 4IP7A 2VGFA 3SRFA 1PKMA 1PKNA 3G2GA 2WPDG 3IS4A 4B2DD 2JJ1G 3ME3A 4DRSA 2VGBA 3QV7A 3N25A 4B2DA 4FXJA 5DN6G 2V7QG 4FXFA 3OEHG 1F3XA 2CK3G 4JPGA 1A3WA
chains in the Genus database with same CATH topology
1A3XA 3PP7A 4YJ5A 3BJFA 4KCUA 1E0UA 3BJTA 3HQPA 3QV8A 4QG8A 1PKLA 1F3WA 4HYWA 1T5AA 3GR4A 3GQYA 4QG6A 3SRHA 3MA8A 4WJ8A 1A5UA 2G50A 4QG9A 3T07A 1PKYA 1A49A 4RPPA 3U2ZA 2E28A 4KCTA 3HQNA 3T05A 4G1NA 2VGGA 4KCWA 3SRKA 3GG8A 3KTXA 4KCVA 3QV6A 1ZJHA 1VP8A 1E0TA 1AQFA 3E0WA 3HQOA 3KHDA 4KRZA 4IMAA 4YNGA 1T57A 3SRDA 4HYVA 2VGIA 3H6OA 4KS0A 3T0TA 4QGCA 3QTGA 3E0VA 3EOEA 3QV9A 4IP7A 2VGFA 3SRFA 1PKMA 1PKNA 3G2GA 3IS4A 4B2DD 3ME3A 4DRSA 2VGBA 3QV7A 3N25A 4B2DA 4FXJA 4FXFA 1F3XA 4JPGA 1A3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A3X A;  3PP7 A;  4YJ5 A;  3BJF A;  4KCU A;  1E0U A;  3BJT A;  3HQP A;  3QV8 A;  4QG8 A;  1PKL A;  1F3W A;  4HYW A;  1T5A A;  3GR4 A;  3GQY A;  4QG6 A;  3SRH A;  3MA8 A;  4WJ8 A;  1A5U A;  2G50 A;  4QG9 A;  3T07 A;  1PKY A;  1A49 A;  4RPP A;  3U2Z A;  2E28 A;  4KCT A;  3HQN A;  3T05 A;  4G1N A;  2VGG A;  4KCW A;  3SRK A;  3GG8 A;  3KTX A;  4KCV A;  3QV6 A;  1ZJH A;  1VP8 A;  1E0T A;  1AQF A;  3E0W A;  3HQO A;  3KHD A;  4KRZ A;  4IMA A;  4YNG A;  1T57 A;  3SRD A;  4HYV A;  2VGI A;  3H6O A;  4KS0 A;  3T0T A;  4QGC A;  3QTG A;  3E0V A;  3EOE A;  3QV9 A;  4IP7 A;  2VGF A;  3SRF A;  1PKM A;  1PKN A;  3G2G A;  3IS4 A;  4B2D D;  3ME3 A;  4DRS A;  2VGB A;  3QV7 A;  3N25 A;  4B2D A;  4FXJ A;  4FXF A;  1F3X A;  4JPG A;  1A3W A; 
#chains in the Genus database with same CATH topology
 1A3X A;  3PP7 A;  4TT3 G;  4YJ5 A;  3BJF A;  4KCU A;  2JDI G;  1E0U A;  3BJT A;  3HQP A;  3QV8 A;  4QG8 A;  4ASU G;  1PKL A;  1F3W A;  4HYW A;  1T5A A;  3GR4 A;  1H8E G;  3GQY A;  4QG6 A;  3SRH A;  3MA8 A;  4WJ8 A;  4TSF G;  3OAA G;  1A5U A;  2G50 A;  4QG9 A;  3T07 A;  1PKY A;  2W6J G;  1A49 A;  3ZIA G;  2WSS G;  2W6I G;  4RPP A;  3U2Z A;  2E28 A;  4KCT A;  5FL7 G;  3HQN A;  3T05 A;  4G1N A;  2XND G;  2VGG A;  4KCW A;  1E79 G;  3OFN G;  3SRK A;  4Z1M G;  3GG8 A;  1FS0 G;  3KTX A;  4KCV A;  2HLD G;  1W0J G;  2QE7 G;  2XOK G;  2JJ2 G;  3FKS G;  3QV6 A;  3AAG A;  1ZJH A;  1VP8 A;  1E0T A;  1AQF A;  3E0W A;  3OEE G;  2JIZ G;  3HQO A;  3KHD A;  4KRZ A;  4IMA A;  4YNG A;  1T57 A;  4YXW G;  3SRD A;  4HYV A;  2VGI A;  3H6O A;  4KS0 A;  3T0T A;  4QGC A;  3QTG A;  3OE7 G;  3E0V A;  3EOE A;  3QV9 A;  4IP7 A;  2VGF A;  3SRF A;  1PKM A;  1PKN A;  3G2G A;  2WPD G;  3IS4 A;  4B2D D;  2JJ1 G;  3ME3 A;  4DRS A;  2VGB A;  3QV7 A;  3N25 A;  4B2D A;  4FXJ A;  5DN6 G;  2V7Q G;  4FXF A;  3OEH G;  1F3X A;  2CK3 G;  4JPG A;  1A3W A; 
#chains in the Genus database with same CATH homology
 1A3X A;  3PP7 A;  4YJ5 A;  3BJF A;  4KCU A;  1E0U A;  3BJT A;  3HQP A;  3QV8 A;  4QG8 A;  1PKL A;  1F3W A;  4HYW A;  1T5A A;  3GR4 A;  3GQY A;  4QG6 A;  3SRH A;  3MA8 A;  4WJ8 A;  1A5U A;  2G50 A;  4QG9 A;  3T07 A;  1PKY A;  1A49 A;  4RPP A;  3U2Z A;  2E28 A;  4KCT A;  3HQN A;  3T05 A;  4G1N A;  2VGG A;  4KCW A;  3SRK A;  3GG8 A;  3KTX A;  4KCV A;  3QV6 A;  1ZJH A;  1VP8 A;  1E0T A;  1AQF A;  3E0W A;  3HQO A;  3KHD A;  4KRZ A;  4IMA A;  4YNG A;  1T57 A;  3SRD A;  4HYV A;  2VGI A;  3H6O A;  4KS0 A;  3T0T A;  4QGC A;  3QTG A;  3E0V A;  3EOE A;  3QV9 A;  4IP7 A;  2VGF A;  3SRF A;  1PKM A;  1PKN A;  3G2G A;  3IS4 A;  4B2D D;  3ME3 A;  4DRS A;  2VGB A;  3QV7 A;  3N25 A;  4B2D A;  4FXJ A;  4FXF A;  1F3X A;  4JPG A;  1A3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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