1EJSA

Crystal structure of the h219n variant of klebsiella aerogenes urease
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
molecule tags Hydrolase
source organism Klebsiella aerogenes
molecule keywords UREASE ALPHA SUBUNIT
total genus 28
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejsA00
4CEUA 1A5LA 1KRCA 1EJXA 4UBPA 1E9ZA 1FWBA 1UBPA 1EJRA 1S3TA 1IE7A 1FWEA 1KRAA 4EPEA 2UBPA 1FWDA 1KRBA 1A5OA 1FWAA 2FVHA 5G4HA 4AC7A 2KAUA 3UBPA 1FWCA 1FWFA 1EJWA 1FWGA 3QGAA 5FSDA 4GY7A 1EF2C 4EPBA 4H9MA 5A6TA 1FWHA 1FWIA 4FURA 4EPDA 3LA4A 4GOAA 4CEXA 1EJTA 1FWJA 1A5KA 5FSEA 4G7EB 1A5NA 1EJSA 1A5MA 4Z42A 1E9YA 4G7EA 4EP8A 3QGKA 1EJUA 1EJVA
chains in the Genus database with same CATH superfamily
4CEUA 1A5LA 1KRCA 1EJXA 4UBPA 1E9ZA 1FWBA 1UBPA 1EJRA 1S3TA 1IE7A 1FWEA 1KRAA 4EPEA 2UBPA 1FWDA 1KRBA 1A5OA 1FWAA 2FVHA 5G4HA 4AC7A 2KAUA 3UBPA 1FWCA 1FWFA 1EJWA 1FWGA 3QGAA 5FSDA 4GY7A 1EF2C 4EPBA 4H9MA 5A6TA 1FWHA 1FWIA 4FURA 4EPDA 3LA4A 4GOAA 4CEXA 1EJTA 1FWJA 1A5KA 5FSEA 4G7EB 1A5NA 1EJSA 1A5MA 4Z42A 1E9YA 4G7EA 4EP8A 3QGKA 1EJUA 1EJVA
chains in the Genus database with same CATH topology
4CEUA 1A5LA 1KRCA 1EJXA 4UBPA 1E9ZA 1FWBA 1UBPA 1EJRA 1S3TA 1IE7A 1FWEA 1KRAA 4EPEA 2UBPA 1FWDA 1KRBA 1A5OA 1FWAA 2FVHA 5G4HA 4AC7A 2KAUA 3UBPA 1FWCA 1FWFA 1EJWA 1FWGA 3QGAA 5FSDA 4GY7A 1EF2C 4EPBA 4H9MA 5A6TA 1FWHA 1FWIA 4FURA 4EPDA 3LA4A 4GOAA 4CEXA 1EJTA 1FWJA 1A5KA 5FSEA 4G7EB 1A5NA 1EJSA 1A5MA 4Z42A 1E9YA 4G7EA 4EP8A 3QGKA 1EJUA 1EJVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CEU A;  1A5L A;  1KRC A;  1EJX A;  4UBP A;  1E9Z A;  1FWB A;  1UBP A;  1EJR A;  1S3T A;  1IE7 A;  1FWE A;  1KRA A;  4EPE A;  2UBP A;  1FWD A;  1KRB A;  1A5O A;  1FWA A;  2FVH A;  5G4H A;  4AC7 A;  2KAU A;  3UBP A;  1FWC A;  1FWF A;  1EJW A;  1FWG A;  3QGA A;  5FSD A;  4GY7 A;  1EF2 C;  4EPB A;  4H9M A;  5A6T A;  1FWH A;  1FWI A;  4FUR A;  4EPD A;  3LA4 A;  4GOA A;  4CEX A;  1EJT A;  1FWJ A;  1A5K A;  5FSE A;  4G7E B;  1A5N A;  1EJS A;  1A5M A;  4Z42 A;  1E9Y A;  4G7E A;  4EP8 A;  3QGK A;  1EJU A;  1EJV A; 
#chains in the Genus database with same CATH topology
 4CEU A;  1A5L A;  1KRC A;  1EJX A;  4UBP A;  1E9Z A;  1FWB A;  1UBP A;  1EJR A;  1S3T A;  1IE7 A;  1FWE A;  1KRA A;  4EPE A;  2UBP A;  1FWD A;  1KRB A;  1A5O A;  1FWA A;  2FVH A;  5G4H A;  4AC7 A;  2KAU A;  3UBP A;  1FWC A;  1FWF A;  1EJW A;  1FWG A;  3QGA A;  5FSD A;  4GY7 A;  1EF2 C;  4EPB A;  4H9M A;  5A6T A;  1FWH A;  1FWI A;  4FUR A;  4EPD A;  3LA4 A;  4GOA A;  4CEX A;  1EJT A;  1FWJ A;  1A5K A;  5FSE A;  4G7E B;  1A5N A;  1EJS A;  1A5M A;  4Z42 A;  1E9Y A;  4G7E A;  4EP8 A;  3QGK A;  1EJU A;  1EJV A; 
#chains in the Genus database with same CATH homology
 4CEU A;  1A5L A;  1KRC A;  1EJX A;  4UBP A;  1E9Z A;  1FWB A;  1UBP A;  1EJR A;  1S3T A;  1IE7 A;  1FWE A;  1KRA A;  4EPE A;  2UBP A;  1FWD A;  1KRB A;  1A5O A;  1FWA A;  2FVH A;  5G4H A;  4AC7 A;  2KAU A;  3UBP A;  1FWC A;  1FWF A;  1EJW A;  1FWG A;  3QGA A;  5FSD A;  4GY7 A;  1EF2 C;  4EPB A;  4H9M A;  5A6T A;  1FWH A;  1FWI A;  4FUR A;  4EPD A;  3LA4 A;  4GOA A;  4CEX A;  1EJT A;  1FWJ A;  1A5K A;  5FSE A;  4G7E B;  1A5N A;  1EJS A;  1A5M A;  4Z42 A;  1E9Y A;  4G7E A;  4EP8 A;  3QGK A;  1EJU A;  1EJV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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