2IT9 | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	123
structure length	120
Chain Sequence	GMIKKEGPGWRIIFDSSRDNFSTLIGGETWAIELDKSEWKILVEVVMELCDQYKLVKEQLMGDEDITLELERRPWLAILNGDQYGWNLRLILSAFNRGAEVYWPRHVTNNVVNAMRSMWD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 120 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of hypothetical protein (YP_292156.1) from Prochlorococcus sp. NATL2A at 1.80 A resolution rcsb
molecule keywords	Hypothetical protein
molecule tags	Structural genomics/unknown function
source organism	Prochlorococcus marinus
total genus	31
structure length	120
sequence length	123
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2006-10-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08848	DUF1818	Domain of unknown function (DUF1818)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	2it9A00

4AGHA 4KOOA 3N1HA 4KOQA 2IT9A 2PHEA 3R9YA 2C62A 4BHMA 4KOPA 3N1LA 3R9ZA 3N1IA 3RA0A 4USGA 2NVNA 1PCFA 1L3AA 3N1KA 4BG7A 3N1JA
chains in the Genus database with same CATH superfamily

4AGHA 4BOBA 4KOOA 3N1HA 4J38A 4KOQA 4BF3A 2IT9A 2PHEA 3R9YA 2GIDA 3K44A 2C62A 2M4FA 4BHMA 3OBHA 4KOPA 3N1LA 3R9ZA 3CM1A 3MTVA 2GIAB 5FGPA 3N1IA 3RA0A 1PCFA 2NVNA 1L3AA 4USGA 4BODA 4BXMA 2GIAA 2GJEA 3N1KA 4BG7A 3N1JA 2GIDB 2GJED
chains in the Genus database with same CATH topology

4AGHA 4KOOA 3N1HA 4KOQA 2IT9A 2PHEA 3R9YA 2C62A 4BHMA 4KOPA 3N1LA 3R9ZA 3N1IA 3RA0A 4USGA 2NVNA 1PCFA 1L3AA 3N1KA 4BG7A 3N1JA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AGH A;  4KOO A;  3N1H A;  4KOQ A;  2IT9 A;  2PHE A;  3R9Y A;  2C62 A;  4BHM A;  4KOP A;  3N1L A;  3R9Z A;  3N1I A;  3RA0 A;  4USG A;  2NVN A;  1PCF A;  1L3A A;  3N1K A;  4BG7 A;  3N1J A; 
#chains in the Genus database with same CATH topology
 4AGH A;  4BOB A;  4KOO A;  3N1H A;  4J38 A;  4KOQ A;  4BF3 A;  2IT9 A;  2PHE A;  3R9Y A;  2GID A;  3K44 A;  2C62 A;  2M4F A;  4BHM A;  3OBH A;  4KOP A;  3N1L A;  3R9Z A;  3CM1 A;  3MTV A;  2GIA B;  5FGP A;  3N1I A;  3RA0 A;  1PCF A;  2NVN A;  1L3A A;  4USG A;  4BOD A;  4BXM A;  2GIA A;  2GJE A;  3N1K A;  4BG7 A;  3N1J A;  2GID B;  2GJE D; 
#chains in the Genus database with same CATH homology
 4AGH A;  4KOO A;  3N1H A;  4KOQ A;  2IT9 A;  2PHE A;  3R9Y A;  2C62 A;  4BHM A;  4KOP A;  3N1L A;  3R9Z A;  3N1I A;  3RA0 A;  4USG A;  2NVN A;  1PCF A;  1L3A A;  3N1K A;  4BG7 A;  3N1J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2IT9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations