The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
27
|
sequence length |
114
|
structure length |
114
|
Chain Sequence |
MKNTGDEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTQKDSKDPDTDLIVPNLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of Lin0431 protein from Listeria innocua reveals high structural similarity with domain II of bacterial transcription antitermination protein NusG.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Listeria innocua
|
| molecule keywords |
Lin0431 protein
|
| total genus |
27
|
| structure length |
114
|
| sequence length |
114
|
| ec nomenclature | |
| pdb deposition date | 2009-10-18 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | mini-chromosome maintenance (MCM) complex, domain 2 | N-utilization substance G protein NusG, insert domain |
#chains in the Genus database with same CATH superfamily 4ESN A; 1M1G A; 2KPP A; 4OBI A; 3LD7 A; 1M1H A; 1NPR A; 1NPP A; #chains in the Genus database with same CATH topology 4ESN A; 4A0T A; 2YQ2 A; 1M1G A; 2KPP A; 4OBI A; 3LD7 A; 1M1H A; 1NPR A; 1NPP A; 4A0U A; #chains in the Genus database with same CATH homology 4ESN A; 1M1G A; 2KPP A; 4OBI A; 3LD7 A; 1M1H A; 1NPR A; 1NPP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
