3LD7A

Crystal structure of the lin0431 protein from listeria innocua, northeast structural genomics consortium target lkr112
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
87
structure length
87
Chain Sequence
GDEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the Lin0431 protein from Listeria innocua
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria innocua
molecule keywords Lin0431 protein
total genus 15
structure length 87
sequence length 87
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-01-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.320.10 Mainly Beta Sandwich mini-chromosome maintenance (MCM) complex, domain 2 N-utilization substance G protein NusG, insert domain 3ld7A00
4OBIA 2KPPA 4ESNA 1M1GA 1NPRA 3LD7A 1NPPA 1M1HA
chains in the Genus database with same CATH superfamily
4OBIA 2KPPA 4ESNA 1M1GA 1NPRA 3LD7A 2YQ2A 1NPPA 1M1HA 4A0UA 4A0TA
chains in the Genus database with same CATH topology
4OBIA 2KPPA 4ESNA 1M1GA 1NPRA 3LD7A 1NPPA 1M1HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OBI A;  2KPP A;  4ESN A;  1M1G A;  1NPR A;  3LD7 A;  1NPP A;  1M1H A; 
#chains in the Genus database with same CATH topology
 4OBI A;  2KPP A;  4ESN A;  1M1G A;  1NPR A;  3LD7 A;  2YQ2 A;  1NPP A;  1M1H A;  4A0U A;  4A0T A; 
#chains in the Genus database with same CATH homology
 4OBI A;  2KPP A;  4ESN A;  1M1G A;  1NPR A;  3LD7 A;  1NPP A;  1M1H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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