3AAG | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	278
structure length	244
Chain Sequence	NEASLLNQLNIANREDYVVTWWDYGYPVRYYSDVTLVDGGHLGDNFFPSFALSDEQAAANMARLSVEYTESFYDILSDILQAMMDYNQSNVDLFLASLSPDFIDTPTRDIYLYMPARMSLIFSTVASFSFINPFTFSTAYPLDVNGEIYLSNGVVLSDDFRSFIGDNVVSVNSIVEINSIQGEYITPIDDAQFYIFYLDSAIPYAQFILMDTMFNSAYVQMFFLGNYDNLFDLVINSRDAVFLI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 244 atoms

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244 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Campylobacter jejuni
publication title	Comparative structural biology of Eubacterial and Archaeal oligosaccharyltransferases. pubmed doi rcsb
molecule keywords	General glycosylation pathway protein
total genus	49
structure length	244
sequence length	278
chains with identical sequence	B
ec nomenclature	ec 2.4.99.19: Undecaprenyl-diphosphooligosaccharide--protein glycotransferase.
pdb deposition date	2009-11-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18527	STT3_PglB_C	STT3/PglB C-terminal beta-barrel domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1380.40	Alpha Beta	3-Layer(aba) Sandwich	Pyruvate Kinase; Chain: A, domain 1	Pyruvate Kinase; Chain: A, domain 1	3aagA01

3AAGA
chains in the Genus database with same CATH superfamily

4TT3G 3T0TA 3U2ZA 2VGFA 3MA8A 1F3XA 2G50A 2XOKG 1T5AA 3E0VA 1A3WA 1FS0G 3SRKA 3BJTA 2JIZG 4RPPA 2WPDG 2XNDG 4TSFG 4Z1MG 2CK3G 2W6JG 3PP7A 4QG8A 1A3XA 1T57A 3EOEA 4YXWG 3GG8A 4FXFA 3QV6A 1PKYA 4KRZA 1A49A 4ASUG 3H6OA 3GQYA 3T07A 1VP8A 2JJ2G 4KCTA 3SRDA 1PKMA 1F3WA 4G1NA 4DRSA 4KS0A 2VGIA 3SRHA 4WJ8A 3OFNG 3T05A 1A5UA 3QTGA 3KHDA 3OE7G 4KCWA 3OEEG 2JJ1G 3ZIAG 1ZJHA 4KCUA 1W0JG 2QE7G 2JDIG 4IP7A 4QG9A 5FL7G 3OAAG 3QV9A 3OEHG 4B2DA 4HYWA 4B2DD 4KCVA 4QG6A 3KTXA 3IS4A 2V7QG 3HQNA 2VGGA 2E28A 4JPGA 3N25A 4YNGA 2HLDG 3QV8A 1AQFA 3BJFA 3E0WA 2VGBA 3HQOA 2W6IG 3SRFA 4IMAA 1E79G 4YJ5A 4HYVA 1E0UA 1H8EG 1E0TA 3GR4A 3HQPA 1PKLA 3G2GA 3QV7A 3FKSG 4QGCA 3AAGA 2WSSG 3ME3A 1PKNA 5DN6G 4FXJA
chains in the Genus database with same CATH topology

4YXWG 4TT3G 2HLDG 3OEEG 2JJ1G 3ZIAG 4ASUG 1W0JG 2QE7G 2W6IG 2JDIG 2XOKG 2JJ2G 5FL7G 3OAAG 1E79G 3OEHG 1FS0G 1H8EG 2JIZG 3FKSG 2WPDG 2XNDG 4TSFG 3OFNG 4Z1MG 2V7QG 2CK3G 3AAGA 2W6JG 2WSSG 5DN6G 3OE7G
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3AAG A; 
#chains in the Genus database with same CATH topology
 4TT3 G;  3T0T A;  3U2Z A;  2VGF A;  3MA8 A;  1F3X A;  2G50 A;  2XOK G;  1T5A A;  3E0V A;  1A3W A;  1FS0 G;  3SRK A;  3BJT A;  2JIZ G;  4RPP A;  2WPD G;  2XND G;  4TSF G;  4Z1M G;  2CK3 G;  2W6J G;  3PP7 A;  4QG8 A;  1A3X A;  1T57 A;  3EOE A;  4YXW G;  3GG8 A;  4FXF A;  3QV6 A;  1PKY A;  4KRZ A;  1A49 A;  4ASU G;  3H6O A;  3GQY A;  3T07 A;  1VP8 A;  2JJ2 G;  4KCT A;  3SRD A;  1PKM A;  1F3W A;  4G1N A;  4DRS A;  4KS0 A;  2VGI A;  3SRH A;  4WJ8 A;  3OFN G;  3T05 A;  1A5U A;  3QTG A;  3KHD A;  3OE7 G;  4KCW A;  3OEE G;  2JJ1 G;  3ZIA G;  1ZJH A;  4KCU A;  1W0J G;  2QE7 G;  2JDI G;  4IP7 A;  4QG9 A;  5FL7 G;  3OAA G;  3QV9 A;  3OEH G;  4B2D A;  4HYW A;  4B2D D;  4KCV A;  4QG6 A;  3KTX A;  3IS4 A;  2V7Q G;  3HQN A;  2VGG A;  2E28 A;  4JPG A;  3N25 A;  4YNG A;  2HLD G;  3QV8 A;  1AQF A;  3BJF A;  3E0W A;  2VGB A;  3HQO A;  2W6I G;  3SRF A;  4IMA A;  1E79 G;  4YJ5 A;  4HYV A;  1E0U A;  1H8E G;  1E0T A;  3GR4 A;  3HQP A;  1PKL A;  3G2G A;  3QV7 A;  3FKS G;  4QGC A;  3AAG A;  2WSS G;  3ME3 A;  1PKN A;  5DN6 G;  4FXJ A; 
#chains in the Genus database with same CATH homology
 4YXW G;  4TT3 G;  2HLD G;  3OEE G;  2JJ1 G;  3ZIA G;  4ASU G;  1W0J G;  2QE7 G;  2W6I G;  2JDI G;  2XOK G;  2JJ2 G;  5FL7 G;  3OAA G;  1E79 G;  3OEH G;  1FS0 G;  1H8E G;  2JIZ G;  3FKS G;  2WPD G;  2XND G;  4TSF G;  3OFN G;  4Z1M G;  2V7Q G;  2CK3 G;  3AAG A;  2W6J G;  2WSS G;  5DN6 G;  3OE7 G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AAGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations