3ALCA

Ethanol regulon transcriptional activator dna-binding domain from aspergillus nidulans
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
65
structure length
65
Chain Sequence
GSMADTRRRQNHSCDPCRKGKRRCDAPENRNEANENGWVSCSNCKRWNKDCTFNWLSSQRSKNSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding properties of this zinc binuclear cluster protein.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Emericella nidulans
molecule keywords PROTEIN (ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR)
total genus 13
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1999-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 3alcA00
1D66A 3COQA 2ALCA 1ZMEC 1PYCA 1PYIA 1QP9A 3ALCA 1AJYA 2ER8A 2EREA 2HAPC 1F5EP 1F4SP 1HWTC 2ERGA 1AW6A
chains in the Genus database with same CATH superfamily
1D66A 3COQA 2ALCA 1ZMEC 1PYCA 1PYIA 1QP9A 3ALCA 1AJYA 2ER8A 2EREA 2HAPC 1F5EP 1F4SP 1HWTC 2ERGA 1AW6A
chains in the Genus database with same CATH topology
1D66A 3COQA 2ALCA 1ZMEC 1PYCA 1PYIA 1QP9A 3ALCA 1AJYA 2ER8A 2EREA 2HAPC 1F5EP 1F4SP 1HWTC 2ERGA 1AW6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D66 A;  3COQ A;  2ALC A;  1ZME C;  1PYC A;  1PYI A;  1QP9 A;  3ALC A;  1AJY A;  2ER8 A;  2ERE A;  2HAP C;  1F5E P;  1F4S P;  1HWT C;  2ERG A;  1AW6 A; 
#chains in the Genus database with same CATH topology
 1D66 A;  3COQ A;  2ALC A;  1ZME C;  1PYC A;  1PYI A;  1QP9 A;  3ALC A;  1AJY A;  2ER8 A;  2ERE A;  2HAP C;  1F5E P;  1F4S P;  1HWT C;  2ERG A;  1AW6 A; 
#chains in the Genus database with same CATH homology
 1D66 A;  3COQ A;  2ALC A;  1ZME C;  1PYC A;  1PYI A;  1QP9 A;  3ALC A;  1AJY A;  2ER8 A;  2ERE A;  2HAP C;  1F5E P;  1F4S P;  1HWT C;  2ERG A;  1AW6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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