3K44 | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	145
structure length	145
Chain Sequence	EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGAN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 145 atoms

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145 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	X-ray structure of Pur-alpha reveals a Whirly-like fold and an unusual nucleic-acid binding surface pubmed doi rcsb
molecule keywords	Purine-rich binding protein-alpha, isoform B
molecule tags	Nucleic acid binding protein
source organism	Drosophila melanogaster
total genus	38
structure length	145
sequence length	145
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2009-10-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.60	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Co-activator pc4; Chain A	3k44A00

3K44A 5FGPA
chains in the Genus database with same CATH superfamily

2IT9A 4BXMA 3RA0A 4KOQA 2GIDB 4BG7A 4USGA 3N1KA 2GIAA 3R9ZA 4BODA 3N1IA 2GIDA 3N1HA 4AGHA 3N1JA 3MTVA 4KOPA 5FGPA 1L3AA 1PCFA 4BOBA 4BF3A 2NVNA 3OBHA 3CM1A 2PHEA 4J38A 2GJED 2M4FA 2GIAB 3R9YA 2GJEA 3K44A 4BHMA 2C62A 4KOOA 3N1LA
chains in the Genus database with same CATH topology

3MTVA 5FGPA 4BXMA 2GIDB 4J38A 2M4FA 2GIAB 2GJEA 4BOBA 2GIDA 3K44A 4BF3A 2GIAA 3OBHA 3CM1A 4BODA 2GJED
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3K44 A;  5FGP A; 
#chains in the Genus database with same CATH topology
 2IT9 A;  4BXM A;  3RA0 A;  4KOQ A;  2GID B;  4BG7 A;  4USG A;  3N1K A;  2GIA A;  3R9Z A;  4BOD A;  3N1I A;  2GID A;  3N1H A;  4AGH A;  3N1J A;  3MTV A;  4KOP A;  5FGP A;  1L3A A;  1PCF A;  4BOB A;  4BF3 A;  2NVN A;  3OBH A;  3CM1 A;  2PHE A;  4J38 A;  2GJE D;  2M4F A;  2GIA B;  3R9Y A;  2GJE A;  3K44 A;  4BHM A;  2C62 A;  4KOO A;  3N1L A; 
#chains in the Genus database with same CATH homology
 3MTV A;  5FGP A;  4BXM A;  2GID B;  4J38 A;  2M4F A;  2GIA B;  2GJE A;  4BOB A;  2GID A;  3K44 A;  4BF3 A;  2GIA A;  3OBH A;  3CM1 A;  4BOD A;  2GJE D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3K44A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN