3N1J | Genus

Total Genus 33

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	161
structure length	161
Chain Sequence	GRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair. pubmed doi rcsb
molecule keywords	Protein StWhy2
molecule tags	Dna binding protein/dna
source organism	Solanum tuberosum
total genus	33
structure length	161
sequence length	161
ec nomenclature
pdb deposition date	2010-05-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08536	Whirly	Whirly transcription factor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	3n1jA00

3N1HA 4USGA 1PCFA 3R9YA 3N1JA 4KOPA 4BHMA 3R9ZA 4AGHA 2NVNA 2IT9A 2C62A 4BG7A 1L3AA 3RA0A 3N1KA 4KOQA 2PHEA 4KOOA 3N1IA 3N1LA
chains in the Genus database with same CATH superfamily

3N1HA 5FGPA 4USGA 1PCFA 3R9YA 3N1JA 4KOPA 4BOBA 4BHMA 2GIAB 3R9ZA 4BODA 4AGHA 2GIDB 2NVNA 2IT9A 2C62A 4J38A 3K44A 4BG7A 2M4FA 3CM1A 1L3AA 4BXMA 3RA0A 3N1KA 2GJED 3OBHA 4KOQA 2PHEA 4BF3A 2GJEA 4KOOA 3N1IA 2GIAA 3MTVA 3N1LA 2GIDA
chains in the Genus database with same CATH topology

3N1HA 4USGA 1PCFA 3R9YA 3N1JA 4KOPA 4BHMA 3R9ZA 4AGHA 2NVNA 2IT9A 2C62A 4BG7A 1L3AA 3RA0A 3N1KA 4KOQA 2PHEA 4KOOA 3N1IA 3N1LA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3N1H A;  4USG A;  1PCF A;  3R9Y A;  3N1J A;  4KOP A;  4BHM A;  3R9Z A;  4AGH A;  2NVN A;  2IT9 A;  2C62 A;  4BG7 A;  1L3A A;  3RA0 A;  3N1K A;  4KOQ A;  2PHE A;  4KOO A;  3N1I A;  3N1L A; 
#chains in the Genus database with same CATH topology
 3N1H A;  5FGP A;  4USG A;  1PCF A;  3R9Y A;  3N1J A;  4KOP A;  4BOB A;  4BHM A;  2GIA B;  3R9Z A;  4BOD A;  4AGH A;  2GID B;  2NVN A;  2IT9 A;  2C62 A;  4J38 A;  3K44 A;  4BG7 A;  2M4F A;  3CM1 A;  1L3A A;  4BXM A;  3RA0 A;  3N1K A;  2GJE D;  3OBH A;  4KOQ A;  2PHE A;  4BF3 A;  2GJE A;  4KOO A;  3N1I A;  2GIA A;  3MTV A;  3N1L A;  2GID A; 
#chains in the Genus database with same CATH homology
 3N1H A;  4USG A;  1PCF A;  3R9Y A;  3N1J A;  4KOP A;  4BHM A;  3R9Z A;  4AGH A;  2NVN A;  2IT9 A;  2C62 A;  4BG7 A;  1L3A A;  3RA0 A;  3N1K A;  4KOQ A;  2PHE A;  4KOO A;  3N1I A;  3N1L A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3N1JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations