3R9Z | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	162
structure length	154
Chain Sequence	REGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage. pubmed doi rcsb
molecule keywords	Why2 protein
molecule tags	Dna binding protein
source organism	Solanum tuberosum
total genus	32
structure length	154
sequence length	162
ec nomenclature
pdb deposition date	2011-03-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08536	Whirly	Whirly transcription factor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	3r9zA00

3N1HA 4AGHA 4BG7A 4USGA 1L3AA 3R9ZA 2IT9A 4BHMA 2PHEA 3RA0A 2C62A 3N1IA 4KOOA 3N1JA 1PCFA 4KOPA 3N1KA 3R9YA 2NVNA 3N1LA 4KOQA
chains in the Genus database with same CATH superfamily

2GJED 3N1HA 4AGHA 4BG7A 4BF3A 4USGA 4BXMA 2GIDA 1L3AA 2GIAA 3MTVA 3R9ZA 2M4FA 2IT9A 3OBHA 4BHMA 2PHEA 2GIDB 3RA0A 2C62A 2GIAB 3K44A 3N1IA 4KOOA 3N1JA 1PCFA 4J38A 4KOPA 4BOBA 3N1KA 3R9YA 3CM1A 2GJEA 2NVNA 4BODA 5FGPA 3N1LA 4KOQA
chains in the Genus database with same CATH topology

3N1HA 4AGHA 4BG7A 4USGA 1L3AA 3R9ZA 2IT9A 4BHMA 2PHEA 3RA0A 2C62A 3N1IA 4KOOA 3N1JA 1PCFA 4KOPA 3N1KA 3R9YA 2NVNA 3N1LA 4KOQA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3N1H A;  4AGH A;  4BG7 A;  4USG A;  1L3A A;  3R9Z A;  2IT9 A;  4BHM A;  2PHE A;  3RA0 A;  2C62 A;  3N1I A;  4KOO A;  3N1J A;  1PCF A;  4KOP A;  3N1K A;  3R9Y A;  2NVN A;  3N1L A;  4KOQ A; 
#chains in the Genus database with same CATH topology
 2GJE D;  3N1H A;  4AGH A;  4BG7 A;  4BF3 A;  4USG A;  4BXM A;  2GID A;  1L3A A;  2GIA A;  3MTV A;  3R9Z A;  2M4F A;  2IT9 A;  3OBH A;  4BHM A;  2PHE A;  2GID B;  3RA0 A;  2C62 A;  2GIA B;  3K44 A;  3N1I A;  4KOO A;  3N1J A;  1PCF A;  4J38 A;  4KOP A;  4BOB A;  3N1K A;  3R9Y A;  3CM1 A;  2GJE A;  2NVN A;  4BOD A;  5FGP A;  3N1L A;  4KOQ A; 
#chains in the Genus database with same CATH homology
 3N1H A;  4AGH A;  4BG7 A;  4USG A;  1L3A A;  3R9Z A;  2IT9 A;  4BHM A;  2PHE A;  3RA0 A;  2C62 A;  3N1I A;  4KOO A;  3N1J A;  1PCF A;  4KOP A;  3N1K A;  3R9Y A;  2NVN A;  3N1L A;  4KOQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3R9ZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations