3S19 | Genus

Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	85
sequence length	261
structure length	261
Chain Sequence	YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRMARQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 261 atoms

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261 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of the R262L mutant of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with preQ0 rcsb
molecule keywords	NADPH-dependent 7-cyano-7-deazaguanine reductase
molecule tags	Oxidoreductase
source organism	Vibrio cholerae
total genus	85
structure length	261
sequence length	261
chains with identical sequence	B, C, D
ec nomenclature	ec 1.7.1.13: PreQ(1) synthase.
pdb deposition date	2011-05-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14489	QueF	QueF-like protein
A	PF14819	QueF_N	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	3s19A02
3.30.1130.10	Alpha Beta	2-Layer Sandwich	GTP Cyclohydrolase I, domain 2	GTP Cyclohydrolase I, domain 2	3s19A01

5FARA 1NBUB 1RS4A 2NM2A 1FBXA 1WUQA 2CG8A 2NM3A 4F8BA 1DHNA 1WPLA 5F3MA 3RZPA 1IS7A 1WM9A 1RSIA 3O1KA 1RSDA 4UQFA 3RJ4A 1GTPA 1NBUC 1RRYA 1U68A 3BP1A 3UXJA 3UXVA 1SQLA 2O90A 3R2EA 1RRIA 1FB1A 1N3SA 1A8RA 1N3TA 1WURA 4GHMA 1RS2A 1RRWA 1N3RA 1B9LA 1Z9WA 4IQIA 1NBUA 1IS8A 1A9CA 4AEYA 4FGCA 3S19A 2DHNA 3V9OA 4DU6A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5FAR A;  1NBU B;  1RS4 A;  2NM2 A;  1FBX A;  1WUQ A;  2CG8 A;  2NM3 A;  4F8B A;  1DHN A;  1WPL A;  5F3M A;  3RZP A;  1IS7 A;  1WM9 A;  1RSI A;  3O1K A;  1RSD A;  4UQF A;  3RJ4 A;  1GTP A;  1NBU C;  1RRY A;  1U68 A;  3BP1 A;  3UXJ A;  3UXV A;  1SQL A;  2O90 A;  3R2E A;  1RRI A;  1FB1 A;  1N3S A;  1A8R A;  1N3T A;  1WUR A;  4GHM A;  1RS2 A;  1RRW A;  1N3R A;  1B9L A;  1Z9W A;  4IQI A;  1NBU A;  1IS8 A;  1A9C A;  4AEY A;  4FGC A;  3S19 A;  2DHN A;  3V9O A;  4DU6 A; 
#chains in the Genus database with same CATH topology
 5FAR A;  1NBU B;  1RS4 A;  2NM2 A;  1FBX A;  1WUQ A;  2CG8 A;  2NM3 A;  4F8B A;  1DHN A;  1WPL A;  5F3M A;  3RZP A;  1IS7 A;  1WM9 A;  1RSI A;  3O1K A;  1RSD A;  4UQF A;  3RJ4 A;  1GTP A;  1NBU C;  1RRY A;  1U68 A;  3BP1 A;  3UXJ A;  3UXV A;  1SQL A;  2O90 A;  3R2E A;  1RRI A;  1FB1 A;  1N3S A;  1A8R A;  1N3T A;  1WUR A;  4GHM A;  1RS2 A;  1RRW A;  1N3R A;  1B9L A;  1Z9W A;  4IQI A;  1NBU A;  1IS8 A;  1A9C A;  4AEY A;  4FGC A;  3S19 A;  2DHN A;  3V9O A;  4DU6 A; 
#chains in the Genus database with same CATH homology
 5FAR A;  1NBU B;  1RS4 A;  2NM2 A;  1FBX A;  1WUQ A;  2CG8 A;  2NM3 A;  4F8B A;  1DHN A;  1WPL A;  5F3M A;  3RZP A;  1IS7 A;  1WM9 A;  1RSI A;  3O1K A;  1RSD A;  4UQF A;  3RJ4 A;  1GTP A;  1NBU C;  1RRY A;  1U68 A;  3BP1 A;  3UXJ A;  3UXV A;  1SQL A;  2O90 A;  3R2E A;  1RRI A;  1FB1 A;  1N3S A;  1A8R A;  1N3T A;  1WUR A;  4GHM A;  1RS2 A;  1RRW A;  1N3R A;  1B9L A;  1Z9W A;  4IQI A;  1NBU A;  1IS8 A;  1A9C A;  4AEY A;  4FGC A;  3S19 A;  2DHN A;  3V9O A;  4DU6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3S19A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations