3KFUE

Crystal structure of the transamidosome
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
468
structure length
468
Chain Sequence
LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase/rna
molecule keywords Non-discriminating and archaeal-type aspartyl-tRNA synthetas
publication title Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 158
structure length 468
sequence length 468
chains with identical sequence H
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2009-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 3kfuE00
2G5IA 2DQNA 3KFUE 1O9NA 3LJ7A 4YJ6A 3A2QA 3IP4A 1OCKA 2G5HA 2DC0A 4J5PA 3H0MA 3QJ8A 4N0HA 2F2AA 4ISSA 2WJ1A 3A1KA 2WAPA 2GI3A 2DF4A 1OBJA 1O9QA 3H0RA 3K84A 3QJ9A 5AC3A 1MT5A 3QKVA 5EWQA 4WJ3A 4ISTA 4GYRA 1OCLA 4YJIA 1O9PA 1M21A 3OJ8A 3PPMA 4CP8A 2VYAA 3K83A 3PR0A 1M22A 3QK5A 4HBPA 3LJ6A 2WJ2A 3A2PA 1OBKA 4DO3A 4GYSA 1OCHA 3H0LA 1OBLA 1OCMA 1OBIA 3K7FA 3AL0A 3A1IA 1O9OA 4N0IA
chains in the Genus database with same CATH superfamily
2G5IA 2DQNA 3KFUE 1O9NA 3LJ7A 4YJ6A 3A2QA 3IP4A 1OCKA 2G5HA 2DC0A 4J5PA 3H0MA 3QJ8A 4N0HA 2F2AA 4ISSA 2WJ1A 3A1KA 2WAPA 2GI3A 2DF4A 1OBJA 1O9QA 3H0RA 3K84A 3QJ9A 5AC3A 1MT5A 3QKVA 5EWQA 4WJ3A 4ISTA 4GYRA 1OCLA 4YJIA 1O9PA 1M21A 3OJ8A 3PPMA 4CP8A 2VYAA 3K83A 3PR0A 1M22A 3QK5A 4HBPA 3LJ6A 2WJ2A 3A2PA 1OBKA 4DO3A 4GYSA 1OCHA 3H0LA 1OBLA 1OCMA 1OBIA 3K7FA 3AL0A 3A1IA 1O9OA 4N0IA
chains in the Genus database with same CATH topology
2G5IA 2DQNA 3KFUE 1O9NA 3LJ7A 4YJ6A 3A2QA 3IP4A 1OCKA 2G5HA 2DC0A 4J5PA 3H0MA 3QJ8A 4N0HA 2F2AA 4ISSA 2WJ1A 3A1KA 2WAPA 2GI3A 2DF4A 1OBJA 1O9QA 3H0RA 3K84A 3QJ9A 5AC3A 1MT5A 3QKVA 5EWQA 4WJ3A 4ISTA 4GYRA 1OCLA 4YJIA 1O9PA 1M21A 3OJ8A 3PPMA 4CP8A 2VYAA 3K83A 3PR0A 1M22A 3QK5A 4HBPA 3LJ6A 2WJ2A 3A2PA 1OBKA 4DO3A 4GYSA 1OCHA 3H0LA 1OBLA 1OCMA 1OBIA 3K7FA 3AL0A 3A1IA 1O9OA 4N0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G5I A;  2DQN A;  3KFU E;  1O9N A;  3LJ7 A;  4YJ6 A;  3A2Q A;  3IP4 A;  1OCK A;  2G5H A;  2DC0 A;  4J5P A;  3H0M A;  3QJ8 A;  4N0H A;  2F2A A;  4ISS A;  2WJ1 A;  3A1K A;  2WAP A;  2GI3 A;  2DF4 A;  1OBJ A;  1O9Q A;  3H0R A;  3K84 A;  3QJ9 A;  5AC3 A;  1MT5 A;  3QKV A;  5EWQ A;  4WJ3 A;  4IST A;  4GYR A;  1OCL A;  4YJI A;  1O9P A;  1M21 A;  3OJ8 A;  3PPM A;  4CP8 A;  2VYA A;  3K83 A;  3PR0 A;  1M22 A;  3QK5 A;  4HBP A;  3LJ6 A;  2WJ2 A;  3A2P A;  1OBK A;  4DO3 A;  4GYS A;  1OCH A;  3H0L A;  1OBL A;  1OCM A;  1OBI A;  3K7F A;  3AL0 A;  3A1I A;  1O9O A;  4N0I A; 
#chains in the Genus database with same CATH topology
 2G5I A;  2DQN A;  3KFU E;  1O9N A;  3LJ7 A;  4YJ6 A;  3A2Q A;  3IP4 A;  1OCK A;  2G5H A;  2DC0 A;  4J5P A;  3H0M A;  3QJ8 A;  4N0H A;  2F2A A;  4ISS A;  2WJ1 A;  3A1K A;  2WAP A;  2GI3 A;  2DF4 A;  1OBJ A;  1O9Q A;  3H0R A;  3K84 A;  3QJ9 A;  5AC3 A;  1MT5 A;  3QKV A;  5EWQ A;  4WJ3 A;  4IST A;  4GYR A;  1OCL A;  4YJI A;  1O9P A;  1M21 A;  3OJ8 A;  3PPM A;  4CP8 A;  2VYA A;  3K83 A;  3PR0 A;  1M22 A;  3QK5 A;  4HBP A;  3LJ6 A;  2WJ2 A;  3A2P A;  1OBK A;  4DO3 A;  4GYS A;  1OCH A;  3H0L A;  1OBL A;  1OCM A;  1OBI A;  3K7F A;  3AL0 A;  3A1I A;  1O9O A;  4N0I A; 
#chains in the Genus database with same CATH homology
 2G5I A;  2DQN A;  3KFU E;  1O9N A;  3LJ7 A;  4YJ6 A;  3A2Q A;  3IP4 A;  1OCK A;  2G5H A;  2DC0 A;  4J5P A;  3H0M A;  3QJ8 A;  4N0H A;  2F2A A;  4ISS A;  2WJ1 A;  3A1K A;  2WAP A;  2GI3 A;  2DF4 A;  1OBJ A;  1O9Q A;  3H0R A;  3K84 A;  3QJ9 A;  5AC3 A;  1MT5 A;  3QKV A;  5EWQ A;  4WJ3 A;  4IST A;  4GYR A;  1OCL A;  4YJI A;  1O9P A;  1M21 A;  3OJ8 A;  3PPM A;  4CP8 A;  2VYA A;  3K83 A;  3PR0 A;  1M22 A;  3QK5 A;  4HBP A;  3LJ6 A;  2WJ2 A;  3A2P A;  1OBK A;  4DO3 A;  4GYS A;  1OCH A;  3H0L A;  1OBL A;  1OCM A;  1OBI A;  3K7F A;  3AL0 A;  3A1I A;  1O9O A;  4N0I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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