The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
142
|
structure length |
133
|
Chain Sequence |
KIEFSEFTVKIKNKNNWADLGDLVVRKEEDGIETGLNVGKAGYTATFFSLEESEVNNFIKAMTEGGSFKTSLYYGYKDEQSNANGIQNKEIITKIEKIDDFEYITFLGDKIKDSGDKVVEYAILLEDLKKNLK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Erpc, a Member of the Complement Regulator-Acquiring Family of Surface Proteins from Borrelia Burgdorferi, Possesses an Architecture Previously Unseen in This Protein Family.
pubmed doi rcsb |
| molecule keywords |
ERPC
|
| molecule tags |
Structural protein
|
| source organism |
Borrelia burgdorferi
|
| total genus |
33
|
| structure length |
133
|
| sequence length |
142
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-03-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02471 | OspE | Borrelia outer surface protein E |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Transcriptional Co-activator pc4; Chain A | Transcriptional Co-activator pc4; Chain A |
#chains in the Genus database with same CATH superfamily 4J38 A; 2M4F A; 4BXM A; 4BOB A; 4BF3 A; 4BOD A; #chains in the Genus database with same CATH topology 1PCF A; 3K44 A; 3CM1 A; 5FGP A; 4KOQ A; 4AGH A; 2C62 A; 2GID B; 4KOO A; 3N1H A; 4BG7 A; 2GIA B; 2M4F A; 3R9Z A; 4BOB A; 2GJE D; 4BF3 A; 4BOD A; 2GID A; 3N1K A; 2GJE A; 1L3A A; 3MTV A; 4BHM A; 2GIA A; 3RA0 A; 3N1I A; 2NVN A; 3N1J A; 4USG A; 3OBH A; 3N1L A; 4J38 A; 4BXM A; 4KOP A; 2IT9 A; 2PHE A; 3R9Y A; #chains in the Genus database with same CATH homology 2GJE A; 3K44 A; 3OBH A; 2GIA B; 3CM1 A; 3MTV A; 2M4F A; 4J38 A; 5FGP A; 4BOB A; 4BF3 A; 4BXM A; 2GJE D; 2GID B; 2GIA A; 4BOD A; 2GID A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
