4BOB | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	136
structure length	132
Chain Sequence	KIEFSKFTVKIKNKDNNSNWTDLGDLVVRKEENGIDTGLNAGGHSATFFSLKESEVNNFIKAMTKGGSFKTSLYYGYKYEQSSANGIQNKEIITKIESINGAEHIAFLGDKINGDKTAEYAIPLEVLKKNLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structures of the Erp Protein Family Members Erpp and Erpc from Borrelia Burgdorferi Reveal the Reason for Different Affinities for Complement Regulator Factor H. pubmed doi rcsb
molecule keywords	ERPP PROTEIN
molecule tags	Cell adhesion
source organism	Borrelia burgdorferi
total genus	34
structure length	132
sequence length	136
ec nomenclature
pdb deposition date	2013-05-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02471	OspE	Borrelia outer surface protein E

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.50	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Co-activator pc4; Chain A	4bobA00

4BF3A 2M4FA 4BOBA 4BODA 4J38A 4BXMA
chains in the Genus database with same CATH superfamily

3N1IA 2GJED 3K44A 2IT9A 4KOOA 3RA0A 4BXMA 2GJEA 3N1JA 2GIDB 1L3AA 4J38A 2PHEA 2NVNA 3CM1A 2GIAB 1PCFA 5FGPA 3N1LA 3MTVA 2GIDA 4BF3A 4BODA 4USGA 3OBHA 3N1HA 3R9ZA 4BG7A 3N1KA 4BHMA 4AGHA 4KOPA 4KOQA 2GIAA 2M4FA 4BOBA 2C62A 3R9YA
chains in the Genus database with same CATH topology

2GJEA 2GJED 3CM1A 2GIAA 2GIAB 3K44A 5FGPA 3MTVA 2M4FA 2GIDA 2GIDB 4BF3A 4BOBA 3OBHA 4BODA 4J38A 4BXMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4BF3 A;  2M4F A;  4BOB A;  4BOD A;  4J38 A;  4BXM A; 
#chains in the Genus database with same CATH topology
 3N1I A;  2GJE D;  3K44 A;  2IT9 A;  4KOO A;  3RA0 A;  4BXM A;  2GJE A;  3N1J A;  2GID B;  1L3A A;  4J38 A;  2PHE A;  2NVN A;  3CM1 A;  2GIA B;  1PCF A;  5FGP A;  3N1L A;  3MTV A;  2GID A;  4BF3 A;  4BOD A;  4USG A;  3OBH A;  3N1H A;  3R9Z A;  4BG7 A;  3N1K A;  4BHM A;  4AGH A;  4KOP A;  4KOQ A;  2GIA A;  2M4F A;  4BOB A;  2C62 A;  3R9Y A; 
#chains in the Genus database with same CATH homology
 2GJE A;  2GJE D;  3CM1 A;  2GIA A;  2GIA B;  3K44 A;  5FGP A;  3MTV A;  2M4F A;  2GID A;  2GID B;  4BF3 A;  4BOB A;  3OBH A;  4BOD A;  4J38 A;  4BXM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4BOBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations