4IOCG

Crystal structure of compound 4f bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
total genus 27
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 4iocG00
3CCJJ 1KC8K 3G4SJ 1Q82K 1VQNJ 2OTJJ 1NJIK 1VQ4J 4V19N 3CPWI 2OTLJ 3CD6J 1YIJJ 3G71J 3CCVJ 3CCMJ 3CCLJ 1QVGI 4IOCG 1J3AA 3CF5G 1N8RK 1M1KK 3CC4J 1YJ9J 3CC7J 1VQOJ 1K9MK 1YITJ 1W2BI 3CCUJ 2QEXJ 3I55J 1K8AK 2ZJQG 3PIOG 3G6EJ 3I56J 1Q7YK 1KQSI 1QVFI 1YJNJ 1KD1K 1VQ9J 3CCSJ 1VQ8J 3CXCI 1VQKJ 1YJWJ 3J7YK 1VQPJ 4IOAG 1S72J 1YI2J 3CMAJ 3CMEJ 3CCRJ 1VQMJ 3CC2J 1VQ5J 1Q81K 1K73K 3DLLG 3CCQJ 2ZJPG 1JJ2I 1M90K 3CCEJ 3OW2I 2ZJRG 4IO9G 2QA4J 1Q86K 1VQ6J 3PIPG 1VQLJ 1YHQJ 1VQ7J
chains in the Genus database with same CATH superfamily
3CCJJ 1KC8K 3G4SJ 1Q82K 1VQNJ 2OTJJ 1NJIK 1VQ4J 4V19N 3CPWI 2OTLJ 3CD6J 1YIJJ 3G71J 3CCVJ 3CCMJ 3CCLJ 1QVGI 4IOCG 1J3AA 3CF5G 1N8RK 1M1KK 3CC4J 1YJ9J 3CC7J 1VQOJ 1K9MK 1YITJ 1W2BI 3CCUJ 2QEXJ 3I55J 1K8AK 2ZJQG 3PIOG 3G6EJ 3I56J 1Q7YK 1KQSI 1QVFI 1YJNJ 1KD1K 1VQ9J 3CCSJ 1VQ8J 3CXCI 1VQKJ 1YJWJ 3J7YK 1VQPJ 4IOAG 1S72J 1YI2J 3CMAJ 3CMEJ 3CCRJ 1VQMJ 3CC2J 1VQ5J 1Q81K 1K73K 3DLLG 3CCQJ 2ZJPG 1JJ2I 1M90K 3CCEJ 3OW2I 2ZJRG 4IO9G 2QA4J 1Q86K 1VQ6J 3PIPG 1VQLJ 1YHQJ 1VQ7J
chains in the Genus database with same CATH topology
3CCJJ 1KC8K 3G4SJ 1Q82K 1VQNJ 2OTJJ 1NJIK 1VQ4J 4V19N 3CPWI 2OTLJ 3CD6J 1YIJJ 3G71J 3CCVJ 3CCMJ 3CCLJ 1QVGI 4IOCG 1J3AA 3CF5G 1N8RK 1M1KK 3CC4J 1YJ9J 3CC7J 1VQOJ 1K9MK 1YITJ 1W2BI 3CCUJ 2QEXJ 3I55J 1K8AK 2ZJQG 3PIOG 3G6EJ 3I56J 1Q7YK 1KQSI 1QVFI 1YJNJ 1KD1K 1VQ9J 3CCSJ 1VQ8J 3CXCI 1VQKJ 1YJWJ 3J7YK 1VQPJ 4IOAG 1S72J 1YI2J 3CMAJ 3CMEJ 3CCRJ 1VQMJ 3CC2J 1VQ5J 1Q81K 1K73K 3DLLG 3CCQJ 2ZJPG 1JJ2I 1M90K 3CCEJ 3OW2I 2ZJRG 4IO9G 2QA4J 1Q86K 1VQ6J 3PIPG 1VQLJ 1YHQJ 1VQ7J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCJ J;  1KC8 K;  3G4S J;  1Q82 K;  1VQN J;  2OTJ J;  1NJI K;  1VQ4 J;  4V19 N;  3CPW I;  2OTL J;  3CD6 J;  1YIJ J;  3G71 J;  3CCV J;  3CCM J;  3CCL J;  1QVG I;  4IOC G;  1J3A A;  3CF5 G;  1N8R K;  1M1K K;  3CC4 J;  1YJ9 J;  3CC7 J;  1VQO J;  1K9M K;  1YIT J;  1W2B I;  3CCU J;  2QEX J;  3I55 J;  1K8A K;  2ZJQ G;  3PIO G;  3G6E J;  3I56 J;  1Q7Y K;  1KQS I;  1QVF I;  1YJN J;  1KD1 K;  1VQ9 J;  3CCS J;  1VQ8 J;  3CXC I;  1VQK J;  1YJW J;  3J7Y K;  1VQP J;  4IOA G;  1S72 J;  1YI2 J;  3CMA J;  3CME J;  3CCR J;  1VQM J;  3CC2 J;  1VQ5 J;  1Q81 K;  1K73 K;  3DLL G;  3CCQ J;  2ZJP G;  1JJ2 I;  1M90 K;  3CCE J;  3OW2 I;  2ZJR G;  4IO9 G;  2QA4 J;  1Q86 K;  1VQ6 J;  3PIP G;  1VQL J;  1YHQ J;  1VQ7 J; 
#chains in the Genus database with same CATH topology
 3CCJ J;  1KC8 K;  3G4S J;  1Q82 K;  1VQN J;  2OTJ J;  1NJI K;  1VQ4 J;  4V19 N;  3CPW I;  2OTL J;  3CD6 J;  1YIJ J;  3G71 J;  3CCV J;  3CCM J;  3CCL J;  1QVG I;  4IOC G;  1J3A A;  3CF5 G;  1N8R K;  1M1K K;  3CC4 J;  1YJ9 J;  3CC7 J;  1VQO J;  1K9M K;  1YIT J;  1W2B I;  3CCU J;  2QEX J;  3I55 J;  1K8A K;  2ZJQ G;  3PIO G;  3G6E J;  3I56 J;  1Q7Y K;  1KQS I;  1QVF I;  1YJN J;  1KD1 K;  1VQ9 J;  3CCS J;  1VQ8 J;  3CXC I;  1VQK J;  1YJW J;  3J7Y K;  1VQP J;  4IOA G;  1S72 J;  1YI2 J;  3CMA J;  3CME J;  3CCR J;  1VQM J;  3CC2 J;  1VQ5 J;  1Q81 K;  1K73 K;  3DLL G;  3CCQ J;  2ZJP G;  1JJ2 I;  1M90 K;  3CCE J;  3OW2 I;  2ZJR G;  4IO9 G;  2QA4 J;  1Q86 K;  1VQ6 J;  3PIP G;  1VQL J;  1YHQ J;  1VQ7 J; 
#chains in the Genus database with same CATH homology
 3CCJ J;  1KC8 K;  3G4S J;  1Q82 K;  1VQN J;  2OTJ J;  1NJI K;  1VQ4 J;  4V19 N;  3CPW I;  2OTL J;  3CD6 J;  1YIJ J;  3G71 J;  3CCV J;  3CCM J;  3CCL J;  1QVG I;  4IOC G;  1J3A A;  3CF5 G;  1N8R K;  1M1K K;  3CC4 J;  1YJ9 J;  3CC7 J;  1VQO J;  1K9M K;  1YIT J;  1W2B I;  3CCU J;  2QEX J;  3I55 J;  1K8A K;  2ZJQ G;  3PIO G;  3G6E J;  3I56 J;  1Q7Y K;  1KQS I;  1QVF I;  1YJN J;  1KD1 K;  1VQ9 J;  3CCS J;  1VQ8 J;  3CXC I;  1VQK J;  1YJW J;  3J7Y K;  1VQP J;  4IOA G;  1S72 J;  1YI2 J;  3CMA J;  3CME J;  3CCR J;  1VQM J;  3CC2 J;  1VQ5 J;  1Q81 K;  1K73 K;  3DLL G;  3CCQ J;  2ZJP G;  1JJ2 I;  1M90 K;  3CCE J;  3OW2 I;  2ZJR G;  4IO9 G;  2QA4 J;  1Q86 K;  1VQ6 J;  3PIP G;  1VQL J;  1YHQ J;  1VQ7 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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