4KOQ | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	169
structure length	169
Chain Sequence	SPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSIKAAALE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 169 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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169 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A family portrait: structural comparison of the Whirly proteins from Arabidopsis thaliana and Solanum tuberosum. pubmed doi rcsb
molecule keywords	Single-stranded DNA-binding protein WHY3, chloroplastic
molecule tags	Dna binding protein
source organism	Arabidopsis thaliana
total genus	38
structure length	169
sequence length	169
ec nomenclature
pdb deposition date	2013-05-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08536	Whirly	Whirly transcription factor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.31.10	Mainly Beta	Roll	Transcriptional Co-activator pc4; Chain A	Transcriptional Coactivator Pc4; Chain A	4koqA00

2IT9A 1PCFA 3RA0A 2PHEA 3N1IA 1L3AA 3R9ZA 2C62A 4KOOA 3N1HA 4KOQA 4KOPA 3N1KA 2NVNA 4BG7A 3N1LA 4BHMA 3R9YA 4AGHA 3N1JA 4USGA
chains in the Genus database with same CATH superfamily

2IT9A 1PCFA 3MTVA 4BOBA 3RA0A 3OBHA 2PHEA 3CM1A 4J38A 3K44A 3N1IA 2GIAA 5FGPA 1L3AA 3R9ZA 2C62A 4BXMA 4BF3A 2GJEA 4KOOA 3N1HA 2GIDB 4BODA 4KOQA 4KOPA 2M4FA 2NVNA 4BG7A 3N1KA 3N1LA 2GJED 4BHMA 3R9YA 4AGHA 2GIDA 3N1JA 2GIAB 4USGA
chains in the Genus database with same CATH topology

2IT9A 1PCFA 3RA0A 2PHEA 3N1IA 1L3AA 3R9ZA 2C62A 4KOOA 3N1HA 4KOQA 4KOPA 3N1KA 2NVNA 4BG7A 3N1LA 4BHMA 3R9YA 4AGHA 3N1JA 4USGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IT9 A;  1PCF A;  3RA0 A;  2PHE A;  3N1I A;  1L3A A;  3R9Z A;  2C62 A;  4KOO A;  3N1H A;  4KOQ A;  4KOP A;  3N1K A;  2NVN A;  4BG7 A;  3N1L A;  4BHM A;  3R9Y A;  4AGH A;  3N1J A;  4USG A; 
#chains in the Genus database with same CATH topology
 2IT9 A;  1PCF A;  3MTV A;  4BOB A;  3RA0 A;  3OBH A;  2PHE A;  3CM1 A;  4J38 A;  3K44 A;  3N1I A;  2GIA A;  5FGP A;  1L3A A;  3R9Z A;  2C62 A;  4BXM A;  4BF3 A;  2GJE A;  4KOO A;  3N1H A;  2GID B;  4BOD A;  4KOQ A;  4KOP A;  2M4F A;  2NVN A;  4BG7 A;  3N1K A;  3N1L A;  2GJE D;  4BHM A;  3R9Y A;  4AGH A;  2GID A;  3N1J A;  2GIA B;  4USG A; 
#chains in the Genus database with same CATH homology
 2IT9 A;  1PCF A;  3RA0 A;  2PHE A;  3N1I A;  1L3A A;  3R9Z A;  2C62 A;  4KOO A;  3N1H A;  4KOQ A;  4KOP A;  3N1K A;  2NVN A;  4BG7 A;  3N1L A;  4BHM A;  3R9Y A;  4AGH A;  3N1J A;  4USG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4KOQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations