4WJ3A

Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
483
structure length
483
Chain Sequence
MLHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERRANGENGALLGAPIAHKDLFCTQGVRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLNMDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKDSTSVEQPVDDYLAALQKPLSGLRIGLPREYFGAGLDSRIADAVLAVVEELKTLGATVKDISLPNMQHAIPAYYVIAPAEASSNLSRFDGVRYGYRCDAPQNLEDLYKRSRAEGFGSEVKNRIMVGTYALSAGYYDAYYLQAQKIRRLIKNDFVSAFAEVDVILGPTTPNPAWKIGEKNDDPVSQYLEDIYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQQVSDWHTRTPAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase/rna
molecule keywords Glutamyl-tRNA(Gln) amidotransferase subunit A
publication title Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
total genus 131
structure length 483
sequence length 483
chains with identical sequence D, G, J
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2014-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 4wj3A00
1OCHA 1O9NA 4ISTA 4J5PA 4GYRA 1OBJA 3A1IA 4YJIA 3QK5A 2VYAA 2DC0A 4N0HA 1OBIA 1M22A 2G5HA 2WJ2A 3QJ9A 3IP4A 2GI3A 1MT5A 2F2AA 2WJ1A 2G5IA 4WJ3A 1OCLA 3H0MA 3K84A 3AL0A 3K83A 3QKVA 4N0IA 3K7FA 3A1KA 1M21A 1O9PA 5EWQA 4ISSA 1O9OA 2DQNA 3A2PA 3H0LA 3A2QA 4GYSA 3KFUE 3PPMA 1OCMA 2DF4A 3QJ8A 3PR0A 3H0RA 2WAPA 4DO3A 4CP8A 5AC3A 3LJ6A 4YJ6A 3LJ7A 1OBLA 1OBKA 1OCKA 3OJ8A 4HBPA 1O9QA
chains in the Genus database with same CATH superfamily
1OCHA 1O9NA 4ISTA 4J5PA 4GYRA 1OBJA 3A1IA 4YJIA 3QK5A 2VYAA 2DC0A 4N0HA 1OBIA 1M22A 2G5HA 2WJ2A 3QJ9A 3IP4A 2GI3A 1MT5A 2F2AA 2WJ1A 2G5IA 4WJ3A 1OCLA 3H0MA 3K84A 3AL0A 3K83A 3QKVA 4N0IA 3K7FA 3A1KA 1M21A 1O9PA 5EWQA 4ISSA 1O9OA 2DQNA 3A2PA 3H0LA 3A2QA 4GYSA 3KFUE 3PPMA 1OCMA 2DF4A 3QJ8A 3PR0A 3H0RA 2WAPA 4DO3A 4CP8A 5AC3A 3LJ6A 4YJ6A 3LJ7A 1OBLA 1OBKA 1OCKA 3OJ8A 4HBPA 1O9QA
chains in the Genus database with same CATH topology
1OCHA 1O9NA 4ISTA 4J5PA 4GYRA 1OBJA 3A1IA 4YJIA 3QK5A 2VYAA 2DC0A 4N0HA 1OBIA 1M22A 2G5HA 2WJ2A 3QJ9A 3IP4A 2GI3A 1MT5A 2F2AA 2WJ1A 2G5IA 4WJ3A 1OCLA 3H0MA 3K84A 3AL0A 3K83A 3QKVA 4N0IA 3K7FA 3A1KA 1M21A 1O9PA 5EWQA 4ISSA 1O9OA 2DQNA 3A2PA 3H0LA 3A2QA 4GYSA 3KFUE 3PPMA 1OCMA 2DF4A 3QJ8A 3PR0A 3H0RA 2WAPA 4DO3A 4CP8A 5AC3A 3LJ6A 4YJ6A 3LJ7A 1OBLA 1OBKA 1OCKA 3OJ8A 4HBPA 1O9QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCH A;  1O9N A;  4IST A;  4J5P A;  4GYR A;  1OBJ A;  3A1I A;  4YJI A;  3QK5 A;  2VYA A;  2DC0 A;  4N0H A;  1OBI A;  1M22 A;  2G5H A;  2WJ2 A;  3QJ9 A;  3IP4 A;  2GI3 A;  1MT5 A;  2F2A A;  2WJ1 A;  2G5I A;  4WJ3 A;  1OCL A;  3H0M A;  3K84 A;  3AL0 A;  3K83 A;  3QKV A;  4N0I A;  3K7F A;  3A1K A;  1M21 A;  1O9P A;  5EWQ A;  4ISS A;  1O9O A;  2DQN A;  3A2P A;  3H0L A;  3A2Q A;  4GYS A;  3KFU E;  3PPM A;  1OCM A;  2DF4 A;  3QJ8 A;  3PR0 A;  3H0R A;  2WAP A;  4DO3 A;  4CP8 A;  5AC3 A;  3LJ6 A;  4YJ6 A;  3LJ7 A;  1OBL A;  1OBK A;  1OCK A;  3OJ8 A;  4HBP A;  1O9Q A; 
#chains in the Genus database with same CATH topology
 1OCH A;  1O9N A;  4IST A;  4J5P A;  4GYR A;  1OBJ A;  3A1I A;  4YJI A;  3QK5 A;  2VYA A;  2DC0 A;  4N0H A;  1OBI A;  1M22 A;  2G5H A;  2WJ2 A;  3QJ9 A;  3IP4 A;  2GI3 A;  1MT5 A;  2F2A A;  2WJ1 A;  2G5I A;  4WJ3 A;  1OCL A;  3H0M A;  3K84 A;  3AL0 A;  3K83 A;  3QKV A;  4N0I A;  3K7F A;  3A1K A;  1M21 A;  1O9P A;  5EWQ A;  4ISS A;  1O9O A;  2DQN A;  3A2P A;  3H0L A;  3A2Q A;  4GYS A;  3KFU E;  3PPM A;  1OCM A;  2DF4 A;  3QJ8 A;  3PR0 A;  3H0R A;  2WAP A;  4DO3 A;  4CP8 A;  5AC3 A;  3LJ6 A;  4YJ6 A;  3LJ7 A;  1OBL A;  1OBK A;  1OCK A;  3OJ8 A;  4HBP A;  1O9Q A; 
#chains in the Genus database with same CATH homology
 1OCH A;  1O9N A;  4IST A;  4J5P A;  4GYR A;  1OBJ A;  3A1I A;  4YJI A;  3QK5 A;  2VYA A;  2DC0 A;  4N0H A;  1OBI A;  1M22 A;  2G5H A;  2WJ2 A;  3QJ9 A;  3IP4 A;  2GI3 A;  1MT5 A;  2F2A A;  2WJ1 A;  2G5I A;  4WJ3 A;  1OCL A;  3H0M A;  3K84 A;  3AL0 A;  3K83 A;  3QKV A;  4N0I A;  3K7F A;  3A1K A;  1M21 A;  1O9P A;  5EWQ A;  4ISS A;  1O9O A;  2DQN A;  3A2P A;  3H0L A;  3A2Q A;  4GYS A;  3KFU E;  3PPM A;  1OCM A;  2DF4 A;  3QJ8 A;  3PR0 A;  3H0R A;  2WAP A;  4DO3 A;  4CP8 A;  5AC3 A;  3LJ6 A;  4YJ6 A;  3LJ7 A;  1OBL A;  1OBK A;  1OCK A;  3OJ8 A;  4HBP A;  1O9Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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