5AC3 | Genus

Total Genus 193

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	193
sequence length	490
structure length	490
Chain Sequence	PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLHAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQDFRPDDAYLVRRLRDAGAVVLGKTNLSEWMNFRSNNSISGWSARGGQTRNPYRPSHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTPGPMARSVADAAAVLTAIAGRDPADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQVPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNYGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELALFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRPEGDDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 490 atoms

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490 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Versatile Peptide C-Terminal Functionalization Via a Computationally Peptide Amidase doi rcsb
molecule keywords	PEPTIDE AMIDASE
molecule tags	Hydrolase
source organism	Stenotrophomonas maltophilia
total genus	193
structure length	490
sequence length	490
ec nomenclature	ec 3.5.1.4: Amidase.
pdb deposition date	2015-08-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01425	Amidase	Amidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1300.10	Alpha Beta	Alpha-Beta Complex	Amidase signature (AS) enzymes	Amidase signature (AS) domain	5ac3A00

1M22A 1M21A 2VYAA 3H0RA 3QJ9A 3A2QA 3QK5A 3OJ8A 1OCKA 4N0HA 1MT5A 4WJ3A 2DC0A 3K83A 1O9NA 4ISTA 1OCMA 3PR0A 4HBPA 4GYRA 1O9OA 3LJ6A 4GYSA 1OCLA 3K7FA 1OCHA 2G5IA 3PPMA 4DO3A 5AC3A 2GI3A 2WAPA 4ISSA 1O9PA 2G5HA 2WJ2A 2F2AA 3IP4A 3K84A 5EWQA 3AL0A 4YJIA 4N0IA 3LJ7A 1OBIA 3A1KA 1O9QA 2WJ1A 3H0LA 4CP8A 3QJ8A 3KFUE 3A1IA 4YJ6A 2DQNA 1OBKA 1OBJA 1OBLA 3H0MA 4J5PA 2DF4A 3A2PA 3QKVA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1M22 A;  1M21 A;  2VYA A;  3H0R A;  3QJ9 A;  3A2Q A;  3QK5 A;  3OJ8 A;  1OCK A;  4N0H A;  1MT5 A;  4WJ3 A;  2DC0 A;  3K83 A;  1O9N A;  4IST A;  1OCM A;  3PR0 A;  4HBP A;  4GYR A;  1O9O A;  3LJ6 A;  4GYS A;  1OCL A;  3K7F A;  1OCH A;  2G5I A;  3PPM A;  4DO3 A;  5AC3 A;  2GI3 A;  2WAP A;  4ISS A;  1O9P A;  2G5H A;  2WJ2 A;  2F2A A;  3IP4 A;  3K84 A;  5EWQ A;  3AL0 A;  4YJI A;  4N0I A;  3LJ7 A;  1OBI A;  3A1K A;  1O9Q A;  2WJ1 A;  3H0L A;  4CP8 A;  3QJ8 A;  3KFU E;  3A1I A;  4YJ6 A;  2DQN A;  1OBK A;  1OBJ A;  1OBL A;  3H0M A;  4J5P A;  2DF4 A;  3A2P A;  3QKV A; 
#chains in the Genus database with same CATH topology
 1M22 A;  1M21 A;  2VYA A;  3H0R A;  3QJ9 A;  3A2Q A;  3QK5 A;  3OJ8 A;  1OCK A;  4N0H A;  1MT5 A;  4WJ3 A;  2DC0 A;  3K83 A;  1O9N A;  4IST A;  1OCM A;  3PR0 A;  4HBP A;  4GYR A;  1O9O A;  3LJ6 A;  4GYS A;  1OCL A;  3K7F A;  1OCH A;  2G5I A;  3PPM A;  4DO3 A;  5AC3 A;  2GI3 A;  2WAP A;  4ISS A;  1O9P A;  2G5H A;  2WJ2 A;  2F2A A;  3IP4 A;  3K84 A;  5EWQ A;  3AL0 A;  4YJI A;  4N0I A;  3LJ7 A;  1OBI A;  3A1K A;  1O9Q A;  2WJ1 A;  3H0L A;  4CP8 A;  3QJ8 A;  3KFU E;  3A1I A;  4YJ6 A;  2DQN A;  1OBK A;  1OBJ A;  1OBL A;  3H0M A;  4J5P A;  2DF4 A;  3A2P A;  3QKV A; 
#chains in the Genus database with same CATH homology
 1M22 A;  1M21 A;  2VYA A;  3H0R A;  3QJ9 A;  3A2Q A;  3QK5 A;  3OJ8 A;  1OCK A;  4N0H A;  1MT5 A;  4WJ3 A;  2DC0 A;  3K83 A;  1O9N A;  4IST A;  1OCM A;  3PR0 A;  4HBP A;  4GYR A;  1O9O A;  3LJ6 A;  4GYS A;  1OCL A;  3K7F A;  1OCH A;  2G5I A;  3PPM A;  4DO3 A;  5AC3 A;  2GI3 A;  2WAP A;  4ISS A;  1O9P A;  2G5H A;  2WJ2 A;  2F2A A;  3IP4 A;  3K84 A;  5EWQ A;  3AL0 A;  4YJI A;  4N0I A;  3LJ7 A;  1OBI A;  3A1K A;  1O9Q A;  2WJ1 A;  3H0L A;  4CP8 A;  3QJ8 A;  3KFU E;  3A1I A;  4YJ6 A;  2DQN A;  1OBK A;  1OBJ A;  1OBL A;  3H0M A;  4J5P A;  2DF4 A;  3A2P A;  3QKV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5AC3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations