1HR0R

Crystal structure of initiation factor if1 bound to the 30s ribosomal subunit
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
source organism Escherichia coli
molecule keywords 16S RIBOSOMAL RNA
total genus 20
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2000-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 1hr0R00
4X64R 1XNRR 4LF4R 2HHHR 4LFBR 4DV3R 4GKJR 2E5LR 5BR8R 4X66R 4LFCR 1IBKR 1IBLR 1J5ER 4JI7R 4LF6R 4YY3R 4DV4R 1N33R 2UUBR 4JI4R 2UUAR 4DR5R 4DR6R 1XMOR 5LMUR 4DV2R 4NXMR 4B3MR 4JI2R 4LFAR 1FJGR 1N34R 1G1XC 1N32R 4JI3R 1FKAR 4KHPR 3OTOR 2UXCR 4DV6R 2VQFR 2UU9R 4DV1R 1HNXR 4JI1R 5LMNR 4OX9R 4B3SR 4DR2R 4JYAR 4DV5R 4DV0R 4B3RR 4JV5R 4DR1R 2VQER 4B3TR 1IBMR 2F4VR 4JI6R 4DUYR 3T1YR 4LF8R 3T1HR 4K0KR 1XNQR 2UXDR 4DUZR 4X65R 4LF7R 1HR0R 4DR4R 1HNWR 4DV7R 4YHHR 1I94R 2UUCR 2ZM6R 4NXNR 2UXBR 4JI5R 1HNZR 4AQYR 1XMQR 4JI0R 4X62R 4DR7R 4GKKR 1N36R 4LF9R 4JI8R 4LF5R 4DR3R
chains in the Genus database with same CATH superfamily
4X64R 1XNRR 4LF4R 2HHHR 4LFBR 4DV3R 4GKJR 2E5LR 5BR8R 4X66R 4LFCR 1IBKR 1IBLR 1J5ER 4JI7R 4LF6R 4YY3R 4DV4R 1N33R 2UUBR 4JI4R 2UUAR 4DR5R 4DR6R 1XMOR 5LMUR 4DV2R 4NXMR 4B3MR 4JI2R 4LFAR 1FJGR 1N34R 1G1XC 1N32R 4JI3R 1FKAR 4KHPR 3OTOR 2UXCR 4DV6R 2VQFR 2UU9R 4DV1R 1HNXR 4JI1R 5LMNR 4OX9R 4B3SR 4DR2R 4JYAR 4DV5R 4DV0R 4B3RR 4JV5R 4DR1R 2VQER 4B3TR 1IBMR 2F4VR 4JI6R 4DUYR 3T1YR 4LF8R 3T1HR 4K0KR 1XNQR 2UXDR 4DUZR 4X65R 4LF7R 1HR0R 4DR4R 1HNWR 4DV7R 4YHHR 1I94R 2UUCR 2ZM6R 4NXNR 2UXBR 4JI5R 1HNZR 4AQYR 1XMQR 4JI0R 4X62R 4DR7R 4GKKR 1N36R 4LF9R 4JI8R 4LF5R 4DR3R
chains in the Genus database with same CATH topology
4X64R 1XNRR 4LF4R 2HHHR 4LFBR 4DV3R 4GKJR 2E5LR 5BR8R 4X66R 4LFCR 1IBKR 1IBLR 1J5ER 4JI7R 4LF6R 4YY3R 4DV4R 1N33R 2UUBR 4JI4R 2UUAR 4DR5R 4DR6R 1XMOR 5LMUR 4DV2R 4NXMR 4B3MR 4JI2R 4LFAR 1FJGR 1N34R 1G1XC 1N32R 4JI3R 1FKAR 4KHPR 3OTOR 2UXCR 4DV6R 2VQFR 2UU9R 4DV1R 1HNXR 4JI1R 5LMNR 4OX9R 4B3SR 4DR2R 4JYAR 4DV5R 4DV0R 4B3RR 4JV5R 4DR1R 2VQER 4B3TR 1IBMR 2F4VR 4JI6R 4DUYR 3T1YR 4LF8R 3T1HR 4K0KR 1XNQR 2UXDR 4DUZR 4X65R 4LF7R 1HR0R 4DR4R 1HNWR 4DV7R 4YHHR 1I94R 2UUCR 2ZM6R 4NXNR 2UXBR 4JI5R 1HNZR 4AQYR 1XMQR 4JI0R 4X62R 4DR7R 4GKKR 1N36R 4LF9R 4JI8R 4LF5R 4DR3R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X64 R;  1XNR R;  4LF4 R;  2HHH R;  4LFB R;  4DV3 R;  4GKJ R;  2E5L R;  5BR8 R;  4X66 R;  4LFC R;  1IBK R;  1IBL R;  1J5E R;  4JI7 R;  4LF6 R;  4YY3 R;  4DV4 R;  1N33 R;  2UUB R;  4JI4 R;  2UUA R;  4DR5 R;  4DR6 R;  1XMO R;  5LMU R;  4DV2 R;  4NXM R;  4B3M R;  4JI2 R;  4LFA R;  1FJG R;  1N34 R;  1G1X C;  1N32 R;  4JI3 R;  1FKA R;  4KHP R;  3OTO R;  2UXC R;  4DV6 R;  2VQF R;  2UU9 R;  4DV1 R;  1HNX R;  4JI1 R;  5LMN R;  4OX9 R;  4B3S R;  4DR2 R;  4JYA R;  4DV5 R;  4DV0 R;  4B3R R;  4JV5 R;  4DR1 R;  2VQE R;  4B3T R;  1IBM R;  2F4V R;  4JI6 R;  4DUY R;  3T1Y R;  4LF8 R;  3T1H R;  4K0K R;  1XNQ R;  2UXD R;  4DUZ R;  4X65 R;  4LF7 R;  1HR0 R;  4DR4 R;  1HNW R;  4DV7 R;  4YHH R;  1I94 R;  2UUC R;  2ZM6 R;  4NXN R;  2UXB R;  4JI5 R;  1HNZ R;  4AQY R;  1XMQ R;  4JI0 R;  4X62 R;  4DR7 R;  4GKK R;  1N36 R;  4LF9 R;  4JI8 R;  4LF5 R;  4DR3 R; 
#chains in the Genus database with same CATH topology
 4X64 R;  1XNR R;  4LF4 R;  2HHH R;  4LFB R;  4DV3 R;  4GKJ R;  2E5L R;  5BR8 R;  4X66 R;  4LFC R;  1IBK R;  1IBL R;  1J5E R;  4JI7 R;  4LF6 R;  4YY3 R;  4DV4 R;  1N33 R;  2UUB R;  4JI4 R;  2UUA R;  4DR5 R;  4DR6 R;  1XMO R;  5LMU R;  4DV2 R;  4NXM R;  4B3M R;  4JI2 R;  4LFA R;  1FJG R;  1N34 R;  1G1X C;  1N32 R;  4JI3 R;  1FKA R;  4KHP R;  3OTO R;  2UXC R;  4DV6 R;  2VQF R;  2UU9 R;  4DV1 R;  1HNX R;  4JI1 R;  5LMN R;  4OX9 R;  4B3S R;  4DR2 R;  4JYA R;  4DV5 R;  4DV0 R;  4B3R R;  4JV5 R;  4DR1 R;  2VQE R;  4B3T R;  1IBM R;  2F4V R;  4JI6 R;  4DUY R;  3T1Y R;  4LF8 R;  3T1H R;  4K0K R;  1XNQ R;  2UXD R;  4DUZ R;  4X65 R;  4LF7 R;  1HR0 R;  4DR4 R;  1HNW R;  4DV7 R;  4YHH R;  1I94 R;  2UUC R;  2ZM6 R;  4NXN R;  2UXB R;  4JI5 R;  1HNZ R;  4AQY R;  1XMQ R;  4JI0 R;  4X62 R;  4DR7 R;  4GKK R;  1N36 R;  4LF9 R;  4JI8 R;  4LF5 R;  4DR3 R; 
#chains in the Genus database with same CATH homology
 4X64 R;  1XNR R;  4LF4 R;  2HHH R;  4LFB R;  4DV3 R;  4GKJ R;  2E5L R;  5BR8 R;  4X66 R;  4LFC R;  1IBK R;  1IBL R;  1J5E R;  4JI7 R;  4LF6 R;  4YY3 R;  4DV4 R;  1N33 R;  2UUB R;  4JI4 R;  2UUA R;  4DR5 R;  4DR6 R;  1XMO R;  5LMU R;  4DV2 R;  4NXM R;  4B3M R;  4JI2 R;  4LFA R;  1FJG R;  1N34 R;  1G1X C;  1N32 R;  4JI3 R;  1FKA R;  4KHP R;  3OTO R;  2UXC R;  4DV6 R;  2VQF R;  2UU9 R;  4DV1 R;  1HNX R;  4JI1 R;  5LMN R;  4OX9 R;  4B3S R;  4DR2 R;  4JYA R;  4DV5 R;  4DV0 R;  4B3R R;  4JV5 R;  4DR1 R;  2VQE R;  4B3T R;  1IBM R;  2F4V R;  4JI6 R;  4DUY R;  3T1Y R;  4LF8 R;  3T1H R;  4K0K R;  1XNQ R;  2UXD R;  4DUZ R;  4X65 R;  4LF7 R;  1HR0 R;  4DR4 R;  1HNW R;  4DV7 R;  4YHH R;  1I94 R;  2UUC R;  2ZM6 R;  4NXN R;  2UXB R;  4JI5 R;  1HNZ R;  4AQY R;  1XMQ R;  4JI0 R;  4X62 R;  4DR7 R;  4GKK R;  1N36 R;  4LF9 R;  4JI8 R;  4LF5 R;  4DR3 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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