4DR7R

Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
71
structure length
71
Chain Sequence
RKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin-induced misreading of the genetic code.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
total genus 16
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2012-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4dr7R00
4LF7R 4DR7R 4B3RR 4DV0R 4DUYR 4JI5R 4LFBR 2ZM6R 4DR5R 2F4VR 1IBKR 1N32R 4OX9R 4DR6R 4B3TR 4JI1R 4X62R 1XNQR 4LF4R 2VQER 4JYAR 4JI3R 2E5LR 5BR8R 1FJGR 4DR3R 5LMUR 2UUAR 1XMOR 1HNZR 4NXMR 2UUCR 1IBLR 2HHHR 4JI6R 4YY3R 4DUZR 1J5ER 4X66R 4NXNR 1HNXR 4KHPR 4JI2R 4LF5R 4JI4R 4JI7R 1FKAR 4DV6R 4LFAR 4LF8R 3T1YR 2UXCR 3T1HR 1HR0R 2UXBR 4JV5R 4B3MR 1N33R 4GKJR 1XNRR 1IBMR 2UUBR 4DV4R 4DV1R 2VQFR 4X64R 4DR1R 1N34R 4LF6R 1XMQR 1G1XC 4X65R 4K0KR 4JI8R 4DR2R 4LFCR 3OTOR 1N36R 5LMNR 2UU9R 1HNWR 4DV3R 4DV7R 2UXDR 4DV2R 4B3SR 4JI0R 4LF9R 4DR4R 4GKKR 1I94R 4YHHR 4AQYR 4DV5R
chains in the Genus database with same CATH superfamily
4LF7R 4DR7R 4B3RR 4DV0R 4DUYR 4JI5R 4LFBR 2ZM6R 4DR5R 2F4VR 1IBKR 1N32R 4OX9R 4DR6R 4B3TR 4JI1R 4X62R 1XNQR 4LF4R 2VQER 4JYAR 4JI3R 2E5LR 5BR8R 1FJGR 4DR3R 5LMUR 2UUAR 1XMOR 1HNZR 4NXMR 2UUCR 1IBLR 2HHHR 4JI6R 4YY3R 4DUZR 1J5ER 4X66R 4NXNR 1HNXR 4KHPR 4JI2R 4LF5R 4JI4R 4JI7R 1FKAR 4DV6R 4LFAR 4LF8R 3T1YR 2UXCR 3T1HR 1HR0R 2UXBR 4JV5R 4B3MR 1N33R 4GKJR 1XNRR 1IBMR 2UUBR 4DV4R 4DV1R 2VQFR 4X64R 4DR1R 1N34R 4LF6R 1XMQR 1G1XC 4X65R 4K0KR 4JI8R 4DR2R 4LFCR 3OTOR 1N36R 5LMNR 2UU9R 1HNWR 4DV3R 4DV7R 2UXDR 4DV2R 4B3SR 4JI0R 4LF9R 4DR4R 4GKKR 1I94R 4YHHR 4AQYR 4DV5R
chains in the Genus database with same CATH topology
4LF7R 4DR7R 4B3RR 4DV0R 4DUYR 4JI5R 4LFBR 2ZM6R 4DR5R 2F4VR 1IBKR 1N32R 4OX9R 4DR6R 4B3TR 4JI1R 4X62R 1XNQR 4LF4R 2VQER 4JYAR 4JI3R 2E5LR 5BR8R 1FJGR 4DR3R 5LMUR 2UUAR 1XMOR 1HNZR 4NXMR 2UUCR 1IBLR 2HHHR 4JI6R 4YY3R 4DUZR 1J5ER 4X66R 4NXNR 1HNXR 4KHPR 4JI2R 4LF5R 4JI4R 4JI7R 1FKAR 4DV6R 4LFAR 4LF8R 3T1YR 2UXCR 3T1HR 1HR0R 2UXBR 4JV5R 4B3MR 1N33R 4GKJR 1XNRR 1IBMR 2UUBR 4DV4R 4DV1R 2VQFR 4X64R 4DR1R 1N34R 4LF6R 1XMQR 1G1XC 4X65R 4K0KR 4JI8R 4DR2R 4LFCR 3OTOR 1N36R 5LMNR 2UU9R 1HNWR 4DV3R 4DV7R 2UXDR 4DV2R 4B3SR 4JI0R 4LF9R 4DR4R 4GKKR 1I94R 4YHHR 4AQYR 4DV5R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LF7 R;  4DR7 R;  4B3R R;  4DV0 R;  4DUY R;  4JI5 R;  4LFB R;  2ZM6 R;  4DR5 R;  2F4V R;  1IBK R;  1N32 R;  4OX9 R;  4DR6 R;  4B3T R;  4JI1 R;  4X62 R;  1XNQ R;  4LF4 R;  2VQE R;  4JYA R;  4JI3 R;  2E5L R;  5BR8 R;  1FJG R;  4DR3 R;  5LMU R;  2UUA R;  1XMO R;  1HNZ R;  4NXM R;  2UUC R;  1IBL R;  2HHH R;  4JI6 R;  4YY3 R;  4DUZ R;  1J5E R;  4X66 R;  4NXN R;  1HNX R;  4KHP R;  4JI2 R;  4LF5 R;  4JI4 R;  4JI7 R;  1FKA R;  4DV6 R;  4LFA R;  4LF8 R;  3T1Y R;  2UXC R;  3T1H R;  1HR0 R;  2UXB R;  4JV5 R;  4B3M R;  1N33 R;  4GKJ R;  1XNR R;  1IBM R;  2UUB R;  4DV4 R;  4DV1 R;  2VQF R;  4X64 R;  4DR1 R;  1N34 R;  4LF6 R;  1XMQ R;  1G1X C;  4X65 R;  4K0K R;  4JI8 R;  4DR2 R;  4LFC R;  3OTO R;  1N36 R;  5LMN R;  2UU9 R;  1HNW R;  4DV3 R;  4DV7 R;  2UXD R;  4DV2 R;  4B3S R;  4JI0 R;  4LF9 R;  4DR4 R;  4GKK R;  1I94 R;  4YHH R;  4AQY R;  4DV5 R; 
#chains in the Genus database with same CATH topology
 4LF7 R;  4DR7 R;  4B3R R;  4DV0 R;  4DUY R;  4JI5 R;  4LFB R;  2ZM6 R;  4DR5 R;  2F4V R;  1IBK R;  1N32 R;  4OX9 R;  4DR6 R;  4B3T R;  4JI1 R;  4X62 R;  1XNQ R;  4LF4 R;  2VQE R;  4JYA R;  4JI3 R;  2E5L R;  5BR8 R;  1FJG R;  4DR3 R;  5LMU R;  2UUA R;  1XMO R;  1HNZ R;  4NXM R;  2UUC R;  1IBL R;  2HHH R;  4JI6 R;  4YY3 R;  4DUZ R;  1J5E R;  4X66 R;  4NXN R;  1HNX R;  4KHP R;  4JI2 R;  4LF5 R;  4JI4 R;  4JI7 R;  1FKA R;  4DV6 R;  4LFA R;  4LF8 R;  3T1Y R;  2UXC R;  3T1H R;  1HR0 R;  2UXB R;  4JV5 R;  4B3M R;  1N33 R;  4GKJ R;  1XNR R;  1IBM R;  2UUB R;  4DV4 R;  4DV1 R;  2VQF R;  4X64 R;  4DR1 R;  1N34 R;  4LF6 R;  1XMQ R;  1G1X C;  4X65 R;  4K0K R;  4JI8 R;  4DR2 R;  4LFC R;  3OTO R;  1N36 R;  5LMN R;  2UU9 R;  1HNW R;  4DV3 R;  4DV7 R;  2UXD R;  4DV2 R;  4B3S R;  4JI0 R;  4LF9 R;  4DR4 R;  4GKK R;  1I94 R;  4YHH R;  4AQY R;  4DV5 R; 
#chains in the Genus database with same CATH homology
 4LF7 R;  4DR7 R;  4B3R R;  4DV0 R;  4DUY R;  4JI5 R;  4LFB R;  2ZM6 R;  4DR5 R;  2F4V R;  1IBK R;  1N32 R;  4OX9 R;  4DR6 R;  4B3T R;  4JI1 R;  4X62 R;  1XNQ R;  4LF4 R;  2VQE R;  4JYA R;  4JI3 R;  2E5L R;  5BR8 R;  1FJG R;  4DR3 R;  5LMU R;  2UUA R;  1XMO R;  1HNZ R;  4NXM R;  2UUC R;  1IBL R;  2HHH R;  4JI6 R;  4YY3 R;  4DUZ R;  1J5E R;  4X66 R;  4NXN R;  1HNX R;  4KHP R;  4JI2 R;  4LF5 R;  4JI4 R;  4JI7 R;  1FKA R;  4DV6 R;  4LFA R;  4LF8 R;  3T1Y R;  2UXC R;  3T1H R;  1HR0 R;  2UXB R;  4JV5 R;  4B3M R;  1N33 R;  4GKJ R;  1XNR R;  1IBM R;  2UUB R;  4DV4 R;  4DV1 R;  2VQF R;  4X64 R;  4DR1 R;  1N34 R;  4LF6 R;  1XMQ R;  1G1X C;  4X65 R;  4K0K R;  4JI8 R;  4DR2 R;  4LFC R;  3OTO R;  1N36 R;  5LMN R;  2UU9 R;  1HNW R;  4DV3 R;  4DV7 R;  2UXD R;  4DV2 R;  4B3S R;  4JI0 R;  4LF9 R;  4DR4 R;  4GKK R;  1I94 R;  4YHH R;  4AQY R;  4DV5 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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