4DR1R

Crystal structure of the apo 30s ribosomal subunit from thermus thermophilus (hb8)
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin-induced misreading of the genetic code.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 18
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2012-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4dr1R00
1XMOR 2UUCR 4X65R 2HHHR 4KHPR 4JI5R 4DR3R 1FJGR 4X66R 4DR2R 4DV3R 4DV2R 4LF6R 1FKAR 4B3SR 3OTOR 4B3MR 4JI4R 5LMNR 2UXCR 1XNQR 4LF7R 4X64R 4DV6R 4DR1R 1J5ER 2VQER 4DR6R 4LFCR 4LF4R 4X62R 1IBLR 4JI7R 4LF9R 1HNWR 2F4VR 1N32R 2ZM6R 4LFBR 1N34R 1N36R 1IBMR 1G1XC 2UXBR 1IBKR 4OX9R 3T1YR 4LF8R 4DUZR 4LF5R 4YHHR 4JV5R 2E5LR 4JI8R 2UU9R 4DV1R 2UUBR 1XNRR 2UXDR 4DUYR 4AQYR 4JI6R 4B3RR 4DV4R 1XMQR 4DR4R 4DV0R 1HNXR 4B3TR 1HNZR 4JYAR 4K0KR 4DR5R 2VQFR 5LMUR 1HR0R 4JI1R 4JI0R 1N33R 4YY3R 3T1HR 2UUAR 4NXMR 4DV7R 4DR7R 4LFAR 4DV5R 4NXNR 4JI2R 4GKJR 4GKKR 5BR8R 4JI3R 1I94R
chains in the Genus database with same CATH superfamily
1XMOR 2UUCR 4X65R 2HHHR 4KHPR 4JI5R 4DR3R 1FJGR 4X66R 4DR2R 4DV3R 4DV2R 4LF6R 1FKAR 4B3SR 3OTOR 4B3MR 4JI4R 5LMNR 2UXCR 1XNQR 4LF7R 4X64R 4DV6R 4DR1R 1J5ER 2VQER 4DR6R 4LFCR 4LF4R 4X62R 1IBLR 4JI7R 4LF9R 1HNWR 2F4VR 1N32R 2ZM6R 4LFBR 1N34R 1N36R 1IBMR 1G1XC 2UXBR 1IBKR 4OX9R 3T1YR 4LF8R 4DUZR 4LF5R 4YHHR 4JV5R 2E5LR 4JI8R 2UU9R 4DV1R 2UUBR 1XNRR 2UXDR 4DUYR 4AQYR 4JI6R 4B3RR 4DV4R 1XMQR 4DR4R 4DV0R 1HNXR 4B3TR 1HNZR 4JYAR 4K0KR 4DR5R 2VQFR 5LMUR 1HR0R 4JI1R 4JI0R 1N33R 4YY3R 3T1HR 2UUAR 4NXMR 4DV7R 4DR7R 4LFAR 4DV5R 4NXNR 4JI2R 4GKJR 4GKKR 5BR8R 4JI3R 1I94R
chains in the Genus database with same CATH topology
1XMOR 2UUCR 4X65R 2HHHR 4KHPR 4JI5R 4DR3R 1FJGR 4X66R 4DR2R 4DV3R 4DV2R 4LF6R 1FKAR 4B3SR 3OTOR 4B3MR 4JI4R 5LMNR 2UXCR 1XNQR 4LF7R 4X64R 4DV6R 4DR1R 1J5ER 2VQER 4DR6R 4LFCR 4LF4R 4X62R 1IBLR 4JI7R 4LF9R 1HNWR 2F4VR 1N32R 2ZM6R 4LFBR 1N34R 1N36R 1IBMR 1G1XC 2UXBR 1IBKR 4OX9R 3T1YR 4LF8R 4DUZR 4LF5R 4YHHR 4JV5R 2E5LR 4JI8R 2UU9R 4DV1R 2UUBR 1XNRR 2UXDR 4DUYR 4AQYR 4JI6R 4B3RR 4DV4R 1XMQR 4DR4R 4DV0R 1HNXR 4B3TR 1HNZR 4JYAR 4K0KR 4DR5R 2VQFR 5LMUR 1HR0R 4JI1R 4JI0R 1N33R 4YY3R 3T1HR 2UUAR 4NXMR 4DV7R 4DR7R 4LFAR 4DV5R 4NXNR 4JI2R 4GKJR 4GKKR 5BR8R 4JI3R 1I94R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XMO R;  2UUC R;  4X65 R;  2HHH R;  4KHP R;  4JI5 R;  4DR3 R;  1FJG R;  4X66 R;  4DR2 R;  4DV3 R;  4DV2 R;  4LF6 R;  1FKA R;  4B3S R;  3OTO R;  4B3M R;  4JI4 R;  5LMN R;  2UXC R;  1XNQ R;  4LF7 R;  4X64 R;  4DV6 R;  4DR1 R;  1J5E R;  2VQE R;  4DR6 R;  4LFC R;  4LF4 R;  4X62 R;  1IBL R;  4JI7 R;  4LF9 R;  1HNW R;  2F4V R;  1N32 R;  2ZM6 R;  4LFB R;  1N34 R;  1N36 R;  1IBM R;  1G1X C;  2UXB R;  1IBK R;  4OX9 R;  3T1Y R;  4LF8 R;  4DUZ R;  4LF5 R;  4YHH R;  4JV5 R;  2E5L R;  4JI8 R;  2UU9 R;  4DV1 R;  2UUB R;  1XNR R;  2UXD R;  4DUY R;  4AQY R;  4JI6 R;  4B3R R;  4DV4 R;  1XMQ R;  4DR4 R;  4DV0 R;  1HNX R;  4B3T R;  1HNZ R;  4JYA R;  4K0K R;  4DR5 R;  2VQF R;  5LMU R;  1HR0 R;  4JI1 R;  4JI0 R;  1N33 R;  4YY3 R;  3T1H R;  2UUA R;  4NXM R;  4DV7 R;  4DR7 R;  4LFA R;  4DV5 R;  4NXN R;  4JI2 R;  4GKJ R;  4GKK R;  5BR8 R;  4JI3 R;  1I94 R; 
#chains in the Genus database with same CATH topology
 1XMO R;  2UUC R;  4X65 R;  2HHH R;  4KHP R;  4JI5 R;  4DR3 R;  1FJG R;  4X66 R;  4DR2 R;  4DV3 R;  4DV2 R;  4LF6 R;  1FKA R;  4B3S R;  3OTO R;  4B3M R;  4JI4 R;  5LMN R;  2UXC R;  1XNQ R;  4LF7 R;  4X64 R;  4DV6 R;  4DR1 R;  1J5E R;  2VQE R;  4DR6 R;  4LFC R;  4LF4 R;  4X62 R;  1IBL R;  4JI7 R;  4LF9 R;  1HNW R;  2F4V R;  1N32 R;  2ZM6 R;  4LFB R;  1N34 R;  1N36 R;  1IBM R;  1G1X C;  2UXB R;  1IBK R;  4OX9 R;  3T1Y R;  4LF8 R;  4DUZ R;  4LF5 R;  4YHH R;  4JV5 R;  2E5L R;  4JI8 R;  2UU9 R;  4DV1 R;  2UUB R;  1XNR R;  2UXD R;  4DUY R;  4AQY R;  4JI6 R;  4B3R R;  4DV4 R;  1XMQ R;  4DR4 R;  4DV0 R;  1HNX R;  4B3T R;  1HNZ R;  4JYA R;  4K0K R;  4DR5 R;  2VQF R;  5LMU R;  1HR0 R;  4JI1 R;  4JI0 R;  1N33 R;  4YY3 R;  3T1H R;  2UUA R;  4NXM R;  4DV7 R;  4DR7 R;  4LFA R;  4DV5 R;  4NXN R;  4JI2 R;  4GKJ R;  4GKK R;  5BR8 R;  4JI3 R;  1I94 R; 
#chains in the Genus database with same CATH homology
 1XMO R;  2UUC R;  4X65 R;  2HHH R;  4KHP R;  4JI5 R;  4DR3 R;  1FJG R;  4X66 R;  4DR2 R;  4DV3 R;  4DV2 R;  4LF6 R;  1FKA R;  4B3S R;  3OTO R;  4B3M R;  4JI4 R;  5LMN R;  2UXC R;  1XNQ R;  4LF7 R;  4X64 R;  4DV6 R;  4DR1 R;  1J5E R;  2VQE R;  4DR6 R;  4LFC R;  4LF4 R;  4X62 R;  1IBL R;  4JI7 R;  4LF9 R;  1HNW R;  2F4V R;  1N32 R;  2ZM6 R;  4LFB R;  1N34 R;  1N36 R;  1IBM R;  1G1X C;  2UXB R;  1IBK R;  4OX9 R;  3T1Y R;  4LF8 R;  4DUZ R;  4LF5 R;  4YHH R;  4JV5 R;  2E5L R;  4JI8 R;  2UU9 R;  4DV1 R;  2UUB R;  1XNR R;  2UXD R;  4DUY R;  4AQY R;  4JI6 R;  4B3R R;  4DV4 R;  1XMQ R;  4DR4 R;  4DV0 R;  1HNX R;  4B3T R;  1HNZ R;  4JYA R;  4K0K R;  4DR5 R;  2VQF R;  5LMU R;  1HR0 R;  4JI1 R;  4JI0 R;  1N33 R;  4YY3 R;  3T1H R;  2UUA R;  4NXM R;  4DV7 R;  4DR7 R;  4LFA R;  4DV5 R;  4NXN R;  4JI2 R;  4GKJ R;  4GKK R;  5BR8 R;  4JI3 R;  1I94 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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