4YHHR

Crystal structure of the 30s ribosomal subunit from thermus thermophilus in complex with tigecycline
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization of an alternative mode of tigecycline binding to the bacterial ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S ribosomal RNA
total genus 9
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2015-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4yhhR00
1HNXR 4JI3R 1FKAR 2UXBR 1FJGR 4DV6R 4LFBR 4LF9R 4DV7R 1XNRR 4LFAR 1N33R 4DUYR 2UUAR 4B3RR 4JYAR 1XNQR 4DR6R 3T1HR 1XMQR 4DR7R 4JI8R 1HR0R 4DV0R 2UXCR 1HNZR 2UUBR 1N34R 4JI5R 4DR5R 4X62R 4LF5R 4DV1R 1IBLR 4DV3R 4DR1R 5LMUR 2ZM6R 4B3SR 2UUCR 1XMOR 4B3MR 4LFCR 5BR8R 1I94R 4JI0R 1IBMR 1N36R 4GKJR 1N32R 1IBKR 2UXDR 3T1YR 4JI7R 1HNWR 4GKKR 1J5ER 4DV4R 1G1XC 4YY3R 4LF4R 4LF7R 4K0KR 2E5LR 2VQER 2HHHR 4DUZR 4X65R 4OX9R 4JI1R 4KHPR 4X64R 4DR4R 4NXMR 4X66R 4YHHR 4JI4R 4LF8R 4NXNR 4JI2R 4JV5R 4DR3R 2VQFR 4DV2R 4AQYR 4LF6R 4DV5R 4B3TR 4DR2R 2F4VR 4JI6R 5LMNR 2UU9R 3OTOR
chains in the Genus database with same CATH superfamily
1HNXR 4JI3R 1FKAR 2UXBR 1FJGR 4DV6R 4LFBR 4LF9R 4DV7R 1XNRR 4LFAR 1N33R 4DUYR 2UUAR 4B3RR 4JYAR 1XNQR 4DR6R 3T1HR 1XMQR 4DR7R 4JI8R 1HR0R 4DV0R 2UXCR 1HNZR 2UUBR 1N34R 4JI5R 4DR5R 4X62R 4LF5R 4DV1R 1IBLR 4DV3R 4DR1R 5LMUR 2ZM6R 4B3SR 2UUCR 1XMOR 4B3MR 4LFCR 5BR8R 1I94R 4JI0R 1IBMR 1N36R 4GKJR 1N32R 1IBKR 2UXDR 3T1YR 4JI7R 1HNWR 4GKKR 1J5ER 4DV4R 1G1XC 4YY3R 4LF4R 4LF7R 4K0KR 2E5LR 2VQER 2HHHR 4DUZR 4X65R 4OX9R 4JI1R 4KHPR 4X64R 4DR4R 4NXMR 4X66R 4YHHR 4JI4R 4LF8R 4NXNR 4JI2R 4JV5R 4DR3R 2VQFR 4DV2R 4AQYR 4LF6R 4DV5R 4B3TR 4DR2R 2F4VR 4JI6R 5LMNR 2UU9R 3OTOR
chains in the Genus database with same CATH topology
1HNXR 4JI3R 1FKAR 2UXBR 1FJGR 4DV6R 4LFBR 4LF9R 4DV7R 1XNRR 4LFAR 1N33R 4DUYR 2UUAR 4B3RR 4JYAR 1XNQR 4DR6R 3T1HR 1XMQR 4DR7R 4JI8R 1HR0R 4DV0R 2UXCR 1HNZR 2UUBR 1N34R 4JI5R 4DR5R 4X62R 4LF5R 4DV1R 1IBLR 4DV3R 4DR1R 5LMUR 2ZM6R 4B3SR 2UUCR 1XMOR 4B3MR 4LFCR 5BR8R 1I94R 4JI0R 1IBMR 1N36R 4GKJR 1N32R 1IBKR 2UXDR 3T1YR 4JI7R 1HNWR 4GKKR 1J5ER 4DV4R 1G1XC 4YY3R 4LF4R 4LF7R 4K0KR 2E5LR 2VQER 2HHHR 4DUZR 4X65R 4OX9R 4JI1R 4KHPR 4X64R 4DR4R 4NXMR 4X66R 4YHHR 4JI4R 4LF8R 4NXNR 4JI2R 4JV5R 4DR3R 2VQFR 4DV2R 4AQYR 4LF6R 4DV5R 4B3TR 4DR2R 2F4VR 4JI6R 5LMNR 2UU9R 3OTOR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HNX R;  4JI3 R;  1FKA R;  2UXB R;  1FJG R;  4DV6 R;  4LFB R;  4LF9 R;  4DV7 R;  1XNR R;  4LFA R;  1N33 R;  4DUY R;  2UUA R;  4B3R R;  4JYA R;  1XNQ R;  4DR6 R;  3T1H R;  1XMQ R;  4DR7 R;  4JI8 R;  1HR0 R;  4DV0 R;  2UXC R;  1HNZ R;  2UUB R;  1N34 R;  4JI5 R;  4DR5 R;  4X62 R;  4LF5 R;  4DV1 R;  1IBL R;  4DV3 R;  4DR1 R;  5LMU R;  2ZM6 R;  4B3S R;  2UUC R;  1XMO R;  4B3M R;  4LFC R;  5BR8 R;  1I94 R;  4JI0 R;  1IBM R;  1N36 R;  4GKJ R;  1N32 R;  1IBK R;  2UXD R;  3T1Y R;  4JI7 R;  1HNW R;  4GKK R;  1J5E R;  4DV4 R;  1G1X C;  4YY3 R;  4LF4 R;  4LF7 R;  4K0K R;  2E5L R;  2VQE R;  2HHH R;  4DUZ R;  4X65 R;  4OX9 R;  4JI1 R;  4KHP R;  4X64 R;  4DR4 R;  4NXM R;  4X66 R;  4YHH R;  4JI4 R;  4LF8 R;  4NXN R;  4JI2 R;  4JV5 R;  4DR3 R;  2VQF R;  4DV2 R;  4AQY R;  4LF6 R;  4DV5 R;  4B3T R;  4DR2 R;  2F4V R;  4JI6 R;  5LMN R;  2UU9 R;  3OTO R; 
#chains in the Genus database with same CATH topology
 1HNX R;  4JI3 R;  1FKA R;  2UXB R;  1FJG R;  4DV6 R;  4LFB R;  4LF9 R;  4DV7 R;  1XNR R;  4LFA R;  1N33 R;  4DUY R;  2UUA R;  4B3R R;  4JYA R;  1XNQ R;  4DR6 R;  3T1H R;  1XMQ R;  4DR7 R;  4JI8 R;  1HR0 R;  4DV0 R;  2UXC R;  1HNZ R;  2UUB R;  1N34 R;  4JI5 R;  4DR5 R;  4X62 R;  4LF5 R;  4DV1 R;  1IBL R;  4DV3 R;  4DR1 R;  5LMU R;  2ZM6 R;  4B3S R;  2UUC R;  1XMO R;  4B3M R;  4LFC R;  5BR8 R;  1I94 R;  4JI0 R;  1IBM R;  1N36 R;  4GKJ R;  1N32 R;  1IBK R;  2UXD R;  3T1Y R;  4JI7 R;  1HNW R;  4GKK R;  1J5E R;  4DV4 R;  1G1X C;  4YY3 R;  4LF4 R;  4LF7 R;  4K0K R;  2E5L R;  2VQE R;  2HHH R;  4DUZ R;  4X65 R;  4OX9 R;  4JI1 R;  4KHP R;  4X64 R;  4DR4 R;  4NXM R;  4X66 R;  4YHH R;  4JI4 R;  4LF8 R;  4NXN R;  4JI2 R;  4JV5 R;  4DR3 R;  2VQF R;  4DV2 R;  4AQY R;  4LF6 R;  4DV5 R;  4B3T R;  4DR2 R;  2F4V R;  4JI6 R;  5LMN R;  2UU9 R;  3OTO R; 
#chains in the Genus database with same CATH homology
 1HNX R;  4JI3 R;  1FKA R;  2UXB R;  1FJG R;  4DV6 R;  4LFB R;  4LF9 R;  4DV7 R;  1XNR R;  4LFA R;  1N33 R;  4DUY R;  2UUA R;  4B3R R;  4JYA R;  1XNQ R;  4DR6 R;  3T1H R;  1XMQ R;  4DR7 R;  4JI8 R;  1HR0 R;  4DV0 R;  2UXC R;  1HNZ R;  2UUB R;  1N34 R;  4JI5 R;  4DR5 R;  4X62 R;  4LF5 R;  4DV1 R;  1IBL R;  4DV3 R;  4DR1 R;  5LMU R;  2ZM6 R;  4B3S R;  2UUC R;  1XMO R;  4B3M R;  4LFC R;  5BR8 R;  1I94 R;  4JI0 R;  1IBM R;  1N36 R;  4GKJ R;  1N32 R;  1IBK R;  2UXD R;  3T1Y R;  4JI7 R;  1HNW R;  4GKK R;  1J5E R;  4DV4 R;  1G1X C;  4YY3 R;  4LF4 R;  4LF7 R;  4K0K R;  2E5L R;  2VQE R;  2HHH R;  4DUZ R;  4X65 R;  4OX9 R;  4JI1 R;  4KHP R;  4X64 R;  4DR4 R;  4NXM R;  4X66 R;  4YHH R;  4JI4 R;  4LF8 R;  4NXN R;  4JI2 R;  4JV5 R;  4DR3 R;  2VQF R;  4DV2 R;  4AQY R;  4LF6 R;  4DV5 R;  4B3T R;  4DR2 R;  2F4V R;  4JI6 R;  5LMN R;  2UU9 R;  3OTO R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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