4JI6R

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 17
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4ji6R00
4DV7R 2ZM6R 1XNRR 4KHPR 4B3MR 1HR0R 1G1XC 4DV1R 4K0KR 1J5ER 4JYAR 2UUCR 4JI6R 4B3RR 3OTOR 1IBLR 1FJGR 4JI8R 1HNXR 2HHHR 4DR1R 4DR6R 1HNZR 1IBMR 4X62R 4X64R 4JI3R 4YHHR 4LF7R 1IBKR 4JI5R 3T1HR 4LF5R 4JI1R 4YY3R 1XMOR 2UUAR 1XNQR 4NXMR 4JI2R 4DUYR 5LMUR 4LF4R 4JV5R 4B3SR 2UUBR 1I94R 4OX9R 1N36R 2UXCR 4LF6R 4DR5R 4DV4R 4DUZR 1HNWR 1N32R 2VQER 2UXBR 4DV2R 4JI7R 2UXDR 5BR8R 4B3TR 4GKJR 4LFCR 4DR7R 4GKKR 4DR4R 1FKAR 4X65R 4DV5R 2E5LR 4DV0R 4JI4R 2VQFR 4AQYR 4LFAR 2UU9R 4LF9R 4DR3R 4LF8R 4LFBR 3T1YR 2F4VR 5LMNR 1N33R 4X66R 4DV3R 4NXNR 4DR2R 4JI0R 1XMQR 4DV6R 1N34R
chains in the Genus database with same CATH superfamily
4DV7R 2ZM6R 1XNRR 4KHPR 4B3MR 1HR0R 1G1XC 4DV1R 4K0KR 1J5ER 4JYAR 2UUCR 4JI6R 4B3RR 3OTOR 1IBLR 1FJGR 4JI8R 1HNXR 2HHHR 4DR1R 4DR6R 1HNZR 1IBMR 4X62R 4X64R 4JI3R 4YHHR 4LF7R 1IBKR 4JI5R 3T1HR 4LF5R 4JI1R 4YY3R 1XMOR 2UUAR 1XNQR 4NXMR 4JI2R 4DUYR 5LMUR 4LF4R 4JV5R 4B3SR 2UUBR 1I94R 4OX9R 1N36R 2UXCR 4LF6R 4DR5R 4DV4R 4DUZR 1HNWR 1N32R 2VQER 2UXBR 4DV2R 4JI7R 2UXDR 5BR8R 4B3TR 4GKJR 4LFCR 4DR7R 4GKKR 4DR4R 1FKAR 4X65R 4DV5R 2E5LR 4DV0R 4JI4R 2VQFR 4AQYR 4LFAR 2UU9R 4LF9R 4DR3R 4LF8R 4LFBR 3T1YR 2F4VR 5LMNR 1N33R 4X66R 4DV3R 4NXNR 4DR2R 4JI0R 1XMQR 4DV6R 1N34R
chains in the Genus database with same CATH topology
4DV7R 2ZM6R 1XNRR 4KHPR 4B3MR 1HR0R 1G1XC 4DV1R 4K0KR 1J5ER 4JYAR 2UUCR 4JI6R 4B3RR 3OTOR 1IBLR 1FJGR 4JI8R 1HNXR 2HHHR 4DR1R 4DR6R 1HNZR 1IBMR 4X62R 4X64R 4JI3R 4YHHR 4LF7R 1IBKR 4JI5R 3T1HR 4LF5R 4JI1R 4YY3R 1XMOR 2UUAR 1XNQR 4NXMR 4JI2R 4DUYR 5LMUR 4LF4R 4JV5R 4B3SR 2UUBR 1I94R 4OX9R 1N36R 2UXCR 4LF6R 4DR5R 4DV4R 4DUZR 1HNWR 1N32R 2VQER 2UXBR 4DV2R 4JI7R 2UXDR 5BR8R 4B3TR 4GKJR 4LFCR 4DR7R 4GKKR 4DR4R 1FKAR 4X65R 4DV5R 2E5LR 4DV0R 4JI4R 2VQFR 4AQYR 4LFAR 2UU9R 4LF9R 4DR3R 4LF8R 4LFBR 3T1YR 2F4VR 5LMNR 1N33R 4X66R 4DV3R 4NXNR 4DR2R 4JI0R 1XMQR 4DV6R 1N34R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DV7 R;  2ZM6 R;  1XNR R;  4KHP R;  4B3M R;  1HR0 R;  1G1X C;  4DV1 R;  4K0K R;  1J5E R;  4JYA R;  2UUC R;  4JI6 R;  4B3R R;  3OTO R;  1IBL R;  1FJG R;  4JI8 R;  1HNX R;  2HHH R;  4DR1 R;  4DR6 R;  1HNZ R;  1IBM R;  4X62 R;  4X64 R;  4JI3 R;  4YHH R;  4LF7 R;  1IBK R;  4JI5 R;  3T1H R;  4LF5 R;  4JI1 R;  4YY3 R;  1XMO R;  2UUA R;  1XNQ R;  4NXM R;  4JI2 R;  4DUY R;  5LMU R;  4LF4 R;  4JV5 R;  4B3S R;  2UUB R;  1I94 R;  4OX9 R;  1N36 R;  2UXC R;  4LF6 R;  4DR5 R;  4DV4 R;  4DUZ R;  1HNW R;  1N32 R;  2VQE R;  2UXB R;  4DV2 R;  4JI7 R;  2UXD R;  5BR8 R;  4B3T R;  4GKJ R;  4LFC R;  4DR7 R;  4GKK R;  4DR4 R;  1FKA R;  4X65 R;  4DV5 R;  2E5L R;  4DV0 R;  4JI4 R;  2VQF R;  4AQY R;  4LFA R;  2UU9 R;  4LF9 R;  4DR3 R;  4LF8 R;  4LFB R;  3T1Y R;  2F4V R;  5LMN R;  1N33 R;  4X66 R;  4DV3 R;  4NXN R;  4DR2 R;  4JI0 R;  1XMQ R;  4DV6 R;  1N34 R; 
#chains in the Genus database with same CATH topology
 4DV7 R;  2ZM6 R;  1XNR R;  4KHP R;  4B3M R;  1HR0 R;  1G1X C;  4DV1 R;  4K0K R;  1J5E R;  4JYA R;  2UUC R;  4JI6 R;  4B3R R;  3OTO R;  1IBL R;  1FJG R;  4JI8 R;  1HNX R;  2HHH R;  4DR1 R;  4DR6 R;  1HNZ R;  1IBM R;  4X62 R;  4X64 R;  4JI3 R;  4YHH R;  4LF7 R;  1IBK R;  4JI5 R;  3T1H R;  4LF5 R;  4JI1 R;  4YY3 R;  1XMO R;  2UUA R;  1XNQ R;  4NXM R;  4JI2 R;  4DUY R;  5LMU R;  4LF4 R;  4JV5 R;  4B3S R;  2UUB R;  1I94 R;  4OX9 R;  1N36 R;  2UXC R;  4LF6 R;  4DR5 R;  4DV4 R;  4DUZ R;  1HNW R;  1N32 R;  2VQE R;  2UXB R;  4DV2 R;  4JI7 R;  2UXD R;  5BR8 R;  4B3T R;  4GKJ R;  4LFC R;  4DR7 R;  4GKK R;  4DR4 R;  1FKA R;  4X65 R;  4DV5 R;  2E5L R;  4DV0 R;  4JI4 R;  2VQF R;  4AQY R;  4LFA R;  2UU9 R;  4LF9 R;  4DR3 R;  4LF8 R;  4LFB R;  3T1Y R;  2F4V R;  5LMN R;  1N33 R;  4X66 R;  4DV3 R;  4NXN R;  4DR2 R;  4JI0 R;  1XMQ R;  4DV6 R;  1N34 R; 
#chains in the Genus database with same CATH homology
 4DV7 R;  2ZM6 R;  1XNR R;  4KHP R;  4B3M R;  1HR0 R;  1G1X C;  4DV1 R;  4K0K R;  1J5E R;  4JYA R;  2UUC R;  4JI6 R;  4B3R R;  3OTO R;  1IBL R;  1FJG R;  4JI8 R;  1HNX R;  2HHH R;  4DR1 R;  4DR6 R;  1HNZ R;  1IBM R;  4X62 R;  4X64 R;  4JI3 R;  4YHH R;  4LF7 R;  1IBK R;  4JI5 R;  3T1H R;  4LF5 R;  4JI1 R;  4YY3 R;  1XMO R;  2UUA R;  1XNQ R;  4NXM R;  4JI2 R;  4DUY R;  5LMU R;  4LF4 R;  4JV5 R;  4B3S R;  2UUB R;  1I94 R;  4OX9 R;  1N36 R;  2UXC R;  4LF6 R;  4DR5 R;  4DV4 R;  4DUZ R;  1HNW R;  1N32 R;  2VQE R;  2UXB R;  4DV2 R;  4JI7 R;  2UXD R;  5BR8 R;  4B3T R;  4GKJ R;  4LFC R;  4DR7 R;  4GKK R;  4DR4 R;  1FKA R;  4X65 R;  4DV5 R;  2E5L R;  4DV0 R;  4JI4 R;  2VQF R;  4AQY R;  4LFA R;  2UU9 R;  4LF9 R;  4DR3 R;  4LF8 R;  4LFB R;  3T1Y R;  2F4V R;  5LMN R;  1N33 R;  4X66 R;  4DV3 R;  4NXN R;  4DR2 R;  4JI0 R;  1XMQ R;  4DV6 R;  1N34 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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