2UUAR

Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guc-codon in the a-site and paromomycin.
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RRNA
total genus 20
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 2uuaR00
4DR5R 1FJGR 1HNXR 1N36R 4B3SR 1XNQR 4DV4R 2ZM6R 1IBLR 1G1XC 4JV5R 4DUZR 4JI4R 2UXDR 1HR0R 4JI2R 1HNZR 1IBMR 4DV5R 4B3RR 4X62R 4YHHR 4K0KR 4DR6R 4JI6R 5LMUR 4LFBR 2UU9R 4LF9R 4LF4R 4DR7R 4X65R 4DR4R 4LF6R 4JI7R 2VQFR 4JYAR 4LF8R 5LMNR 1N34R 4AQYR 4DV6R 4DV1R 4B3TR 4YY3R 4X64R 3T1HR 4DR2R 4LF7R 4DUYR 4B3MR 4JI1R 4X66R 2UXCR 1XMQR 1N32R 4OX9R 4LF5R 4DV0R 4KHPR 1XNRR 2UUCR 4NXMR 2UUBR 4DV2R 2HHHR 4GKJR 1IBKR 1XMOR 2F4VR 4JI0R 4JI5R 4DR3R 1N33R 3OTOR 1J5ER 1I94R 4LFCR 4DV7R 4DV3R 1FKAR 3T1YR 1HNWR 4GKKR 5BR8R 4JI3R 4DR1R 2UXBR 4LFAR 4NXNR 4JI8R 2UUAR 2VQER 2E5LR
chains in the Genus database with same CATH superfamily
4DR5R 1FJGR 1HNXR 1N36R 4B3SR 1XNQR 4DV4R 2ZM6R 1IBLR 1G1XC 4JV5R 4DUZR 4JI4R 2UXDR 1HR0R 4JI2R 1HNZR 1IBMR 4DV5R 4B3RR 4X62R 4YHHR 4K0KR 4DR6R 4JI6R 5LMUR 4LFBR 2UU9R 4LF9R 4LF4R 4DR7R 4X65R 4DR4R 4LF6R 4JI7R 2VQFR 4JYAR 4LF8R 5LMNR 1N34R 4AQYR 4DV6R 4DV1R 4B3TR 4YY3R 4X64R 3T1HR 4DR2R 4LF7R 4DUYR 4B3MR 4JI1R 4X66R 2UXCR 1XMQR 1N32R 4OX9R 4LF5R 4DV0R 4KHPR 1XNRR 2UUCR 4NXMR 2UUBR 4DV2R 2HHHR 4GKJR 1IBKR 1XMOR 2F4VR 4JI0R 4JI5R 4DR3R 1N33R 3OTOR 1J5ER 1I94R 4LFCR 4DV7R 4DV3R 1FKAR 3T1YR 1HNWR 4GKKR 5BR8R 4JI3R 4DR1R 2UXBR 4LFAR 4NXNR 4JI8R 2UUAR 2VQER 2E5LR
chains in the Genus database with same CATH topology
4DR5R 1FJGR 1HNXR 1N36R 4B3SR 1XNQR 4DV4R 2ZM6R 1IBLR 1G1XC 4JV5R 4DUZR 4JI4R 2UXDR 1HR0R 4JI2R 1HNZR 1IBMR 4DV5R 4B3RR 4X62R 4YHHR 4K0KR 4DR6R 4JI6R 5LMUR 4LFBR 2UU9R 4LF9R 4LF4R 4DR7R 4X65R 4DR4R 4LF6R 4JI7R 2VQFR 4JYAR 4LF8R 5LMNR 1N34R 4AQYR 4DV6R 4DV1R 4B3TR 4YY3R 4X64R 3T1HR 4DR2R 4LF7R 4DUYR 4B3MR 4JI1R 4X66R 2UXCR 1XMQR 1N32R 4OX9R 4LF5R 4DV0R 4KHPR 1XNRR 2UUCR 4NXMR 2UUBR 4DV2R 2HHHR 4GKJR 1IBKR 1XMOR 2F4VR 4JI0R 4JI5R 4DR3R 1N33R 3OTOR 1J5ER 1I94R 4LFCR 4DV7R 4DV3R 1FKAR 3T1YR 1HNWR 4GKKR 5BR8R 4JI3R 4DR1R 2UXBR 4LFAR 4NXNR 4JI8R 2UUAR 2VQER 2E5LR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR5 R;  1FJG R;  1HNX R;  1N36 R;  4B3S R;  1XNQ R;  4DV4 R;  2ZM6 R;  1IBL R;  1G1X C;  4JV5 R;  4DUZ R;  4JI4 R;  2UXD R;  1HR0 R;  4JI2 R;  1HNZ R;  1IBM R;  4DV5 R;  4B3R R;  4X62 R;  4YHH R;  4K0K R;  4DR6 R;  4JI6 R;  5LMU R;  4LFB R;  2UU9 R;  4LF9 R;  4LF4 R;  4DR7 R;  4X65 R;  4DR4 R;  4LF6 R;  4JI7 R;  2VQF R;  4JYA R;  4LF8 R;  5LMN R;  1N34 R;  4AQY R;  4DV6 R;  4DV1 R;  4B3T R;  4YY3 R;  4X64 R;  3T1H R;  4DR2 R;  4LF7 R;  4DUY R;  4B3M R;  4JI1 R;  4X66 R;  2UXC R;  1XMQ R;  1N32 R;  4OX9 R;  4LF5 R;  4DV0 R;  4KHP R;  1XNR R;  2UUC R;  4NXM R;  2UUB R;  4DV2 R;  2HHH R;  4GKJ R;  1IBK R;  1XMO R;  2F4V R;  4JI0 R;  4JI5 R;  4DR3 R;  1N33 R;  3OTO R;  1J5E R;  1I94 R;  4LFC R;  4DV7 R;  4DV3 R;  1FKA R;  3T1Y R;  1HNW R;  4GKK R;  5BR8 R;  4JI3 R;  4DR1 R;  2UXB R;  4LFA R;  4NXN R;  4JI8 R;  2UUA R;  2VQE R;  2E5L R; 
#chains in the Genus database with same CATH topology
 4DR5 R;  1FJG R;  1HNX R;  1N36 R;  4B3S R;  1XNQ R;  4DV4 R;  2ZM6 R;  1IBL R;  1G1X C;  4JV5 R;  4DUZ R;  4JI4 R;  2UXD R;  1HR0 R;  4JI2 R;  1HNZ R;  1IBM R;  4DV5 R;  4B3R R;  4X62 R;  4YHH R;  4K0K R;  4DR6 R;  4JI6 R;  5LMU R;  4LFB R;  2UU9 R;  4LF9 R;  4LF4 R;  4DR7 R;  4X65 R;  4DR4 R;  4LF6 R;  4JI7 R;  2VQF R;  4JYA R;  4LF8 R;  5LMN R;  1N34 R;  4AQY R;  4DV6 R;  4DV1 R;  4B3T R;  4YY3 R;  4X64 R;  3T1H R;  4DR2 R;  4LF7 R;  4DUY R;  4B3M R;  4JI1 R;  4X66 R;  2UXC R;  1XMQ R;  1N32 R;  4OX9 R;  4LF5 R;  4DV0 R;  4KHP R;  1XNR R;  2UUC R;  4NXM R;  2UUB R;  4DV2 R;  2HHH R;  4GKJ R;  1IBK R;  1XMO R;  2F4V R;  4JI0 R;  4JI5 R;  4DR3 R;  1N33 R;  3OTO R;  1J5E R;  1I94 R;  4LFC R;  4DV7 R;  4DV3 R;  1FKA R;  3T1Y R;  1HNW R;  4GKK R;  5BR8 R;  4JI3 R;  4DR1 R;  2UXB R;  4LFA R;  4NXN R;  4JI8 R;  2UUA R;  2VQE R;  2E5L R; 
#chains in the Genus database with same CATH homology
 4DR5 R;  1FJG R;  1HNX R;  1N36 R;  4B3S R;  1XNQ R;  4DV4 R;  2ZM6 R;  1IBL R;  1G1X C;  4JV5 R;  4DUZ R;  4JI4 R;  2UXD R;  1HR0 R;  4JI2 R;  1HNZ R;  1IBM R;  4DV5 R;  4B3R R;  4X62 R;  4YHH R;  4K0K R;  4DR6 R;  4JI6 R;  5LMU R;  4LFB R;  2UU9 R;  4LF9 R;  4LF4 R;  4DR7 R;  4X65 R;  4DR4 R;  4LF6 R;  4JI7 R;  2VQF R;  4JYA R;  4LF8 R;  5LMN R;  1N34 R;  4AQY R;  4DV6 R;  4DV1 R;  4B3T R;  4YY3 R;  4X64 R;  3T1H R;  4DR2 R;  4LF7 R;  4DUY R;  4B3M R;  4JI1 R;  4X66 R;  2UXC R;  1XMQ R;  1N32 R;  4OX9 R;  4LF5 R;  4DV0 R;  4KHP R;  1XNR R;  2UUC R;  4NXM R;  2UUB R;  4DV2 R;  2HHH R;  4GKJ R;  1IBK R;  1XMO R;  2F4V R;  4JI0 R;  4JI5 R;  4DR3 R;  1N33 R;  3OTO R;  1J5E R;  1I94 R;  4LFC R;  4DV7 R;  4DV3 R;  1FKA R;  3T1Y R;  1HNW R;  4GKK R;  5BR8 R;  4JI3 R;  4DR1 R;  2UXB R;  4LFA R;  4NXN R;  4JI8 R;  2UUA R;  2VQE R;  2E5L R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...