4JYAR

Crystal structures of pseudouridinilated stop codons with asls
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Unusual base pairing during the decoding of a stop codon by the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S ribosomal RNA
total genus 20
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2013-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4jyaR00
2E5LR 4DV5R 1HNWR 4K0KR 1N34R 2UUAR 1G1XC 2UUCR 4YY3R 1FJGR 4JI5R 4AQYR 4DR2R 3OTOR 4JI0R 2VQFR 4DR3R 1N33R 4X64R 4B3MR 4NXNR 4X66R 2UUBR 4B3TR 4KHPR 1XNRR 2UU9R 4LF8R 1XNQR 4JI6R 4JI4R 4DV0R 4DV4R 4DR5R 1IBMR 1I94R 1XMQR 4JI3R 4LF4R 4X62R 1N32R 4JV5R 4LF6R 4JI2R 4LF9R 4LF7R 4DV2R 1N36R 2VQER 4DV1R 4GKKR 5LMNR 1IBKR 4LFAR 2UXBR 4DR4R 5BR8R 4JI1R 1HNZR 1HR0R 4LFBR 4DR6R 4LF5R 4YHHR 4B3RR 4X65R 2F4VR 5LMUR 4LFCR 4JI7R 1J5ER 4DR7R 1XMOR 4JYAR 4DUYR 4JI8R 2UXCR 4B3SR 3T1YR 2HHHR 3T1HR 2UXDR 4DR1R 4NXMR 4DV3R 1IBLR 1FKAR 4GKJR 4DV7R 1HNXR 4OX9R 4DV6R 2ZM6R 4DUZR
chains in the Genus database with same CATH superfamily
2E5LR 4DV5R 1HNWR 4K0KR 1N34R 2UUAR 1G1XC 2UUCR 4YY3R 1FJGR 4JI5R 4AQYR 4DR2R 3OTOR 4JI0R 2VQFR 4DR3R 1N33R 4X64R 4B3MR 4NXNR 4X66R 2UUBR 4B3TR 4KHPR 1XNRR 2UU9R 4LF8R 1XNQR 4JI6R 4JI4R 4DV0R 4DV4R 4DR5R 1IBMR 1I94R 1XMQR 4JI3R 4LF4R 4X62R 1N32R 4JV5R 4LF6R 4JI2R 4LF9R 4LF7R 4DV2R 1N36R 2VQER 4DV1R 4GKKR 5LMNR 1IBKR 4LFAR 2UXBR 4DR4R 5BR8R 4JI1R 1HNZR 1HR0R 4LFBR 4DR6R 4LF5R 4YHHR 4B3RR 4X65R 2F4VR 5LMUR 4LFCR 4JI7R 1J5ER 4DR7R 1XMOR 4JYAR 4DUYR 4JI8R 2UXCR 4B3SR 3T1YR 2HHHR 3T1HR 2UXDR 4DR1R 4NXMR 4DV3R 1IBLR 1FKAR 4GKJR 4DV7R 1HNXR 4OX9R 4DV6R 2ZM6R 4DUZR
chains in the Genus database with same CATH topology
2E5LR 4DV5R 1HNWR 4K0KR 1N34R 2UUAR 1G1XC 2UUCR 4YY3R 1FJGR 4JI5R 4AQYR 4DR2R 3OTOR 4JI0R 2VQFR 4DR3R 1N33R 4X64R 4B3MR 4NXNR 4X66R 2UUBR 4B3TR 4KHPR 1XNRR 2UU9R 4LF8R 1XNQR 4JI6R 4JI4R 4DV0R 4DV4R 4DR5R 1IBMR 1I94R 1XMQR 4JI3R 4LF4R 4X62R 1N32R 4JV5R 4LF6R 4JI2R 4LF9R 4LF7R 4DV2R 1N36R 2VQER 4DV1R 4GKKR 5LMNR 1IBKR 4LFAR 2UXBR 4DR4R 5BR8R 4JI1R 1HNZR 1HR0R 4LFBR 4DR6R 4LF5R 4YHHR 4B3RR 4X65R 2F4VR 5LMUR 4LFCR 4JI7R 1J5ER 4DR7R 1XMOR 4JYAR 4DUYR 4JI8R 2UXCR 4B3SR 3T1YR 2HHHR 3T1HR 2UXDR 4DR1R 4NXMR 4DV3R 1IBLR 1FKAR 4GKJR 4DV7R 1HNXR 4OX9R 4DV6R 2ZM6R 4DUZR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E5L R;  4DV5 R;  1HNW R;  4K0K R;  1N34 R;  2UUA R;  1G1X C;  2UUC R;  4YY3 R;  1FJG R;  4JI5 R;  4AQY R;  4DR2 R;  3OTO R;  4JI0 R;  2VQF R;  4DR3 R;  1N33 R;  4X64 R;  4B3M R;  4NXN R;  4X66 R;  2UUB R;  4B3T R;  4KHP R;  1XNR R;  2UU9 R;  4LF8 R;  1XNQ R;  4JI6 R;  4JI4 R;  4DV0 R;  4DV4 R;  4DR5 R;  1IBM R;  1I94 R;  1XMQ R;  4JI3 R;  4LF4 R;  4X62 R;  1N32 R;  4JV5 R;  4LF6 R;  4JI2 R;  4LF9 R;  4LF7 R;  4DV2 R;  1N36 R;  2VQE R;  4DV1 R;  4GKK R;  5LMN R;  1IBK R;  4LFA R;  2UXB R;  4DR4 R;  5BR8 R;  4JI1 R;  1HNZ R;  1HR0 R;  4LFB R;  4DR6 R;  4LF5 R;  4YHH R;  4B3R R;  4X65 R;  2F4V R;  5LMU R;  4LFC R;  4JI7 R;  1J5E R;  4DR7 R;  1XMO R;  4JYA R;  4DUY R;  4JI8 R;  2UXC R;  4B3S R;  3T1Y R;  2HHH R;  3T1H R;  2UXD R;  4DR1 R;  4NXM R;  4DV3 R;  1IBL R;  1FKA R;  4GKJ R;  4DV7 R;  1HNX R;  4OX9 R;  4DV6 R;  2ZM6 R;  4DUZ R; 
#chains in the Genus database with same CATH topology
 2E5L R;  4DV5 R;  1HNW R;  4K0K R;  1N34 R;  2UUA R;  1G1X C;  2UUC R;  4YY3 R;  1FJG R;  4JI5 R;  4AQY R;  4DR2 R;  3OTO R;  4JI0 R;  2VQF R;  4DR3 R;  1N33 R;  4X64 R;  4B3M R;  4NXN R;  4X66 R;  2UUB R;  4B3T R;  4KHP R;  1XNR R;  2UU9 R;  4LF8 R;  1XNQ R;  4JI6 R;  4JI4 R;  4DV0 R;  4DV4 R;  4DR5 R;  1IBM R;  1I94 R;  1XMQ R;  4JI3 R;  4LF4 R;  4X62 R;  1N32 R;  4JV5 R;  4LF6 R;  4JI2 R;  4LF9 R;  4LF7 R;  4DV2 R;  1N36 R;  2VQE R;  4DV1 R;  4GKK R;  5LMN R;  1IBK R;  4LFA R;  2UXB R;  4DR4 R;  5BR8 R;  4JI1 R;  1HNZ R;  1HR0 R;  4LFB R;  4DR6 R;  4LF5 R;  4YHH R;  4B3R R;  4X65 R;  2F4V R;  5LMU R;  4LFC R;  4JI7 R;  1J5E R;  4DR7 R;  1XMO R;  4JYA R;  4DUY R;  4JI8 R;  2UXC R;  4B3S R;  3T1Y R;  2HHH R;  3T1H R;  2UXD R;  4DR1 R;  4NXM R;  4DV3 R;  1IBL R;  1FKA R;  4GKJ R;  4DV7 R;  1HNX R;  4OX9 R;  4DV6 R;  2ZM6 R;  4DUZ R; 
#chains in the Genus database with same CATH homology
 2E5L R;  4DV5 R;  1HNW R;  4K0K R;  1N34 R;  2UUA R;  1G1X C;  2UUC R;  4YY3 R;  1FJG R;  4JI5 R;  4AQY R;  4DR2 R;  3OTO R;  4JI0 R;  2VQF R;  4DR3 R;  1N33 R;  4X64 R;  4B3M R;  4NXN R;  4X66 R;  2UUB R;  4B3T R;  4KHP R;  1XNR R;  2UU9 R;  4LF8 R;  1XNQ R;  4JI6 R;  4JI4 R;  4DV0 R;  4DV4 R;  4DR5 R;  1IBM R;  1I94 R;  1XMQ R;  4JI3 R;  4LF4 R;  4X62 R;  1N32 R;  4JV5 R;  4LF6 R;  4JI2 R;  4LF9 R;  4LF7 R;  4DV2 R;  1N36 R;  2VQE R;  4DV1 R;  4GKK R;  5LMN R;  1IBK R;  4LFA R;  2UXB R;  4DR4 R;  5BR8 R;  4JI1 R;  1HNZ R;  1HR0 R;  4LFB R;  4DR6 R;  4LF5 R;  4YHH R;  4B3R R;  4X65 R;  2F4V R;  5LMU R;  4LFC R;  4JI7 R;  1J5E R;  4DR7 R;  1XMO R;  4JYA R;  4DUY R;  4JI8 R;  2UXC R;  4B3S R;  3T1Y R;  2HHH R;  3T1H R;  2UXD R;  4DR1 R;  4NXM R;  4DV3 R;  1IBL R;  1FKA R;  4GKJ R;  4DV7 R;  1HNX R;  4OX9 R;  4DV6 R;  2ZM6 R;  4DUZ R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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