2UXCR

Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna ucgu in the context of the thermus thermophilus 30s subunit.
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 20
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 2uxcR00
4JI2R 4LF9R 2ZM6R 2UXBR 4X65R 4DV3R 4LF5R 4NXNR 4KHPR 2HHHR 4YHHR 4DV7R 1HR0R 4B3SR 4AQYR 1HNZR 1XNRR 4DV5R 1HNWR 1IBKR 4B3MR 5LMUR 4NXMR 4DV4R 4JI7R 4GKKR 4X66R 4JI0R 1XMQR 1N36R 1IBLR 4DR7R 1IBMR 4DR1R 4LF6R 4GKJR 4X64R 3T1YR 2F4VR 4LFBR 4JI6R 4YY3R 4LF8R 3OTOR 2UUBR 5BR8R 2UUAR 1N34R 4JI8R 4DUZR 1J5ER 4DV6R 1FJGR 4DV0R 1FKAR 4DUYR 1G1XC 4K0KR 2VQER 4LFAR 5LMNR 2UXDR 4B3RR 2E5LR 2UXCR 2UUCR 4JYAR 4DR2R 4JI5R 4B3TR 1HNXR 1N32R 4OX9R 3T1HR 4LFCR 4JI3R 1I94R 4JV5R 4JI1R 4JI4R 4X62R 2UU9R 4LF4R 4DR3R 1XNQR 1XMOR 4DR5R 4DR6R 2VQFR 4LF7R 4DV2R 1N33R 4DV1R 4DR4R
chains in the Genus database with same CATH superfamily
4JI2R 4LF9R 2ZM6R 2UXBR 4X65R 4DV3R 4LF5R 4NXNR 4KHPR 2HHHR 4YHHR 4DV7R 1HR0R 4B3SR 4AQYR 1HNZR 1XNRR 4DV5R 1HNWR 1IBKR 4B3MR 5LMUR 4NXMR 4DV4R 4JI7R 4GKKR 4X66R 4JI0R 1XMQR 1N36R 1IBLR 4DR7R 1IBMR 4DR1R 4LF6R 4GKJR 4X64R 3T1YR 2F4VR 4LFBR 4JI6R 4YY3R 4LF8R 3OTOR 2UUBR 5BR8R 2UUAR 1N34R 4JI8R 4DUZR 1J5ER 4DV6R 1FJGR 4DV0R 1FKAR 4DUYR 1G1XC 4K0KR 2VQER 4LFAR 5LMNR 2UXDR 4B3RR 2E5LR 2UXCR 2UUCR 4JYAR 4DR2R 4JI5R 4B3TR 1HNXR 1N32R 4OX9R 3T1HR 4LFCR 4JI3R 1I94R 4JV5R 4JI1R 4JI4R 4X62R 2UU9R 4LF4R 4DR3R 1XNQR 1XMOR 4DR5R 4DR6R 2VQFR 4LF7R 4DV2R 1N33R 4DV1R 4DR4R
chains in the Genus database with same CATH topology
4JI2R 4LF9R 2ZM6R 2UXBR 4X65R 4DV3R 4LF5R 4NXNR 4KHPR 2HHHR 4YHHR 4DV7R 1HR0R 4B3SR 4AQYR 1HNZR 1XNRR 4DV5R 1HNWR 1IBKR 4B3MR 5LMUR 4NXMR 4DV4R 4JI7R 4GKKR 4X66R 4JI0R 1XMQR 1N36R 1IBLR 4DR7R 1IBMR 4DR1R 4LF6R 4GKJR 4X64R 3T1YR 2F4VR 4LFBR 4JI6R 4YY3R 4LF8R 3OTOR 2UUBR 5BR8R 2UUAR 1N34R 4JI8R 4DUZR 1J5ER 4DV6R 1FJGR 4DV0R 1FKAR 4DUYR 1G1XC 4K0KR 2VQER 4LFAR 5LMNR 2UXDR 4B3RR 2E5LR 2UXCR 2UUCR 4JYAR 4DR2R 4JI5R 4B3TR 1HNXR 1N32R 4OX9R 3T1HR 4LFCR 4JI3R 1I94R 4JV5R 4JI1R 4JI4R 4X62R 2UU9R 4LF4R 4DR3R 1XNQR 1XMOR 4DR5R 4DR6R 2VQFR 4LF7R 4DV2R 1N33R 4DV1R 4DR4R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI2 R;  4LF9 R;  2ZM6 R;  2UXB R;  4X65 R;  4DV3 R;  4LF5 R;  4NXN R;  4KHP R;  2HHH R;  4YHH R;  4DV7 R;  1HR0 R;  4B3S R;  4AQY R;  1HNZ R;  1XNR R;  4DV5 R;  1HNW R;  1IBK R;  4B3M R;  5LMU R;  4NXM R;  4DV4 R;  4JI7 R;  4GKK R;  4X66 R;  4JI0 R;  1XMQ R;  1N36 R;  1IBL R;  4DR7 R;  1IBM R;  4DR1 R;  4LF6 R;  4GKJ R;  4X64 R;  3T1Y R;  2F4V R;  4LFB R;  4JI6 R;  4YY3 R;  4LF8 R;  3OTO R;  2UUB R;  5BR8 R;  2UUA R;  1N34 R;  4JI8 R;  4DUZ R;  1J5E R;  4DV6 R;  1FJG R;  4DV0 R;  1FKA R;  4DUY R;  1G1X C;  4K0K R;  2VQE R;  4LFA R;  5LMN R;  2UXD R;  4B3R R;  2E5L R;  2UXC R;  2UUC R;  4JYA R;  4DR2 R;  4JI5 R;  4B3T R;  1HNX R;  1N32 R;  4OX9 R;  3T1H R;  4LFC R;  4JI3 R;  1I94 R;  4JV5 R;  4JI1 R;  4JI4 R;  4X62 R;  2UU9 R;  4LF4 R;  4DR3 R;  1XNQ R;  1XMO R;  4DR5 R;  4DR6 R;  2VQF R;  4LF7 R;  4DV2 R;  1N33 R;  4DV1 R;  4DR4 R; 
#chains in the Genus database with same CATH topology
 4JI2 R;  4LF9 R;  2ZM6 R;  2UXB R;  4X65 R;  4DV3 R;  4LF5 R;  4NXN R;  4KHP R;  2HHH R;  4YHH R;  4DV7 R;  1HR0 R;  4B3S R;  4AQY R;  1HNZ R;  1XNR R;  4DV5 R;  1HNW R;  1IBK R;  4B3M R;  5LMU R;  4NXM R;  4DV4 R;  4JI7 R;  4GKK R;  4X66 R;  4JI0 R;  1XMQ R;  1N36 R;  1IBL R;  4DR7 R;  1IBM R;  4DR1 R;  4LF6 R;  4GKJ R;  4X64 R;  3T1Y R;  2F4V R;  4LFB R;  4JI6 R;  4YY3 R;  4LF8 R;  3OTO R;  2UUB R;  5BR8 R;  2UUA R;  1N34 R;  4JI8 R;  4DUZ R;  1J5E R;  4DV6 R;  1FJG R;  4DV0 R;  1FKA R;  4DUY R;  1G1X C;  4K0K R;  2VQE R;  4LFA R;  5LMN R;  2UXD R;  4B3R R;  2E5L R;  2UXC R;  2UUC R;  4JYA R;  4DR2 R;  4JI5 R;  4B3T R;  1HNX R;  1N32 R;  4OX9 R;  3T1H R;  4LFC R;  4JI3 R;  1I94 R;  4JV5 R;  4JI1 R;  4JI4 R;  4X62 R;  2UU9 R;  4LF4 R;  4DR3 R;  1XNQ R;  1XMO R;  4DR5 R;  4DR6 R;  2VQF R;  4LF7 R;  4DV2 R;  1N33 R;  4DV1 R;  4DR4 R; 
#chains in the Genus database with same CATH homology
 4JI2 R;  4LF9 R;  2ZM6 R;  2UXB R;  4X65 R;  4DV3 R;  4LF5 R;  4NXN R;  4KHP R;  2HHH R;  4YHH R;  4DV7 R;  1HR0 R;  4B3S R;  4AQY R;  1HNZ R;  1XNR R;  4DV5 R;  1HNW R;  1IBK R;  4B3M R;  5LMU R;  4NXM R;  4DV4 R;  4JI7 R;  4GKK R;  4X66 R;  4JI0 R;  1XMQ R;  1N36 R;  1IBL R;  4DR7 R;  1IBM R;  4DR1 R;  4LF6 R;  4GKJ R;  4X64 R;  3T1Y R;  2F4V R;  4LFB R;  4JI6 R;  4YY3 R;  4LF8 R;  3OTO R;  2UUB R;  5BR8 R;  2UUA R;  1N34 R;  4JI8 R;  4DUZ R;  1J5E R;  4DV6 R;  1FJG R;  4DV0 R;  1FKA R;  4DUY R;  1G1X C;  4K0K R;  2VQE R;  4LFA R;  5LMN R;  2UXD R;  4B3R R;  2E5L R;  2UXC R;  2UUC R;  4JYA R;  4DR2 R;  4JI5 R;  4B3T R;  1HNX R;  1N32 R;  4OX9 R;  3T1H R;  4LFC R;  4JI3 R;  1I94 R;  4JV5 R;  4JI1 R;  4JI4 R;  4X62 R;  2UU9 R;  4LF4 R;  4DR3 R;  1XNQ R;  1XMO R;  4DR5 R;  4DR6 R;  2VQF R;  4LF7 R;  4DV2 R;  1N33 R;  4DV1 R;  4DR4 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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