4JI1R

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
total genus 19
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4ji1R00
4JI3R 4LF9R 4DV7R 4LFBR 4DV1R 2F4VR 4LFCR 1XNRR 1HR0R 4KHPR 1J5ER 2VQFR 3T1YR 2E5LR 1IBMR 1FKAR 4DV0R 4NXMR 4LFAR 4B3MR 4DV2R 4DV4R 4X64R 4DR1R 4DR3R 4DR7R 4DUYR 4JYAR 2ZM6R 4YHHR 4DR5R 2UUBR 4LF6R 2UUAR 4B3SR 4JV5R 4AQYR 4JI7R 2HHHR 4X62R 4LF5R 4YY3R 3T1HR 4NXNR 2UXDR 1N33R 4B3RR 4JI5R 1N36R 4JI6R 5LMUR 1XMQR 1XNQR 1HNWR 4GKJR 4GKKR 1I94R 4JI8R 1N34R 2UXCR 5LMNR 4LF7R 4K0KR 4LF8R 3OTOR 4DR2R 4OX9R 4LF4R 1G1XC 4JI1R 1IBKR 4JI2R 1FJGR 2UXBR 4JI4R 1IBLR 4DV3R 1HNXR 4DUZR 1XMOR 4B3TR 4DR6R 5BR8R 4JI0R 1N32R 4DR4R 1HNZR 2VQER 2UUCR 4DV6R 4X66R 4DV5R 2UU9R 4X65R
chains in the Genus database with same CATH superfamily
4JI3R 4LF9R 4DV7R 4LFBR 4DV1R 2F4VR 4LFCR 1XNRR 1HR0R 4KHPR 1J5ER 2VQFR 3T1YR 2E5LR 1IBMR 1FKAR 4DV0R 4NXMR 4LFAR 4B3MR 4DV2R 4DV4R 4X64R 4DR1R 4DR3R 4DR7R 4DUYR 4JYAR 2ZM6R 4YHHR 4DR5R 2UUBR 4LF6R 2UUAR 4B3SR 4JV5R 4AQYR 4JI7R 2HHHR 4X62R 4LF5R 4YY3R 3T1HR 4NXNR 2UXDR 1N33R 4B3RR 4JI5R 1N36R 4JI6R 5LMUR 1XMQR 1XNQR 1HNWR 4GKJR 4GKKR 1I94R 4JI8R 1N34R 2UXCR 5LMNR 4LF7R 4K0KR 4LF8R 3OTOR 4DR2R 4OX9R 4LF4R 1G1XC 4JI1R 1IBKR 4JI2R 1FJGR 2UXBR 4JI4R 1IBLR 4DV3R 1HNXR 4DUZR 1XMOR 4B3TR 4DR6R 5BR8R 4JI0R 1N32R 4DR4R 1HNZR 2VQER 2UUCR 4DV6R 4X66R 4DV5R 2UU9R 4X65R
chains in the Genus database with same CATH topology
4JI3R 4LF9R 4DV7R 4LFBR 4DV1R 2F4VR 4LFCR 1XNRR 1HR0R 4KHPR 1J5ER 2VQFR 3T1YR 2E5LR 1IBMR 1FKAR 4DV0R 4NXMR 4LFAR 4B3MR 4DV2R 4DV4R 4X64R 4DR1R 4DR3R 4DR7R 4DUYR 4JYAR 2ZM6R 4YHHR 4DR5R 2UUBR 4LF6R 2UUAR 4B3SR 4JV5R 4AQYR 4JI7R 2HHHR 4X62R 4LF5R 4YY3R 3T1HR 4NXNR 2UXDR 1N33R 4B3RR 4JI5R 1N36R 4JI6R 5LMUR 1XMQR 1XNQR 1HNWR 4GKJR 4GKKR 1I94R 4JI8R 1N34R 2UXCR 5LMNR 4LF7R 4K0KR 4LF8R 3OTOR 4DR2R 4OX9R 4LF4R 1G1XC 4JI1R 1IBKR 4JI2R 1FJGR 2UXBR 4JI4R 1IBLR 4DV3R 1HNXR 4DUZR 1XMOR 4B3TR 4DR6R 5BR8R 4JI0R 1N32R 4DR4R 1HNZR 2VQER 2UUCR 4DV6R 4X66R 4DV5R 2UU9R 4X65R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI3 R;  4LF9 R;  4DV7 R;  4LFB R;  4DV1 R;  2F4V R;  4LFC R;  1XNR R;  1HR0 R;  4KHP R;  1J5E R;  2VQF R;  3T1Y R;  2E5L R;  1IBM R;  1FKA R;  4DV0 R;  4NXM R;  4LFA R;  4B3M R;  4DV2 R;  4DV4 R;  4X64 R;  4DR1 R;  4DR3 R;  4DR7 R;  4DUY R;  4JYA R;  2ZM6 R;  4YHH R;  4DR5 R;  2UUB R;  4LF6 R;  2UUA R;  4B3S R;  4JV5 R;  4AQY R;  4JI7 R;  2HHH R;  4X62 R;  4LF5 R;  4YY3 R;  3T1H R;  4NXN R;  2UXD R;  1N33 R;  4B3R R;  4JI5 R;  1N36 R;  4JI6 R;  5LMU R;  1XMQ R;  1XNQ R;  1HNW R;  4GKJ R;  4GKK R;  1I94 R;  4JI8 R;  1N34 R;  2UXC R;  5LMN R;  4LF7 R;  4K0K R;  4LF8 R;  3OTO R;  4DR2 R;  4OX9 R;  4LF4 R;  1G1X C;  4JI1 R;  1IBK R;  4JI2 R;  1FJG R;  2UXB R;  4JI4 R;  1IBL R;  4DV3 R;  1HNX R;  4DUZ R;  1XMO R;  4B3T R;  4DR6 R;  5BR8 R;  4JI0 R;  1N32 R;  4DR4 R;  1HNZ R;  2VQE R;  2UUC R;  4DV6 R;  4X66 R;  4DV5 R;  2UU9 R;  4X65 R; 
#chains in the Genus database with same CATH topology
 4JI3 R;  4LF9 R;  4DV7 R;  4LFB R;  4DV1 R;  2F4V R;  4LFC R;  1XNR R;  1HR0 R;  4KHP R;  1J5E R;  2VQF R;  3T1Y R;  2E5L R;  1IBM R;  1FKA R;  4DV0 R;  4NXM R;  4LFA R;  4B3M R;  4DV2 R;  4DV4 R;  4X64 R;  4DR1 R;  4DR3 R;  4DR7 R;  4DUY R;  4JYA R;  2ZM6 R;  4YHH R;  4DR5 R;  2UUB R;  4LF6 R;  2UUA R;  4B3S R;  4JV5 R;  4AQY R;  4JI7 R;  2HHH R;  4X62 R;  4LF5 R;  4YY3 R;  3T1H R;  4NXN R;  2UXD R;  1N33 R;  4B3R R;  4JI5 R;  1N36 R;  4JI6 R;  5LMU R;  1XMQ R;  1XNQ R;  1HNW R;  4GKJ R;  4GKK R;  1I94 R;  4JI8 R;  1N34 R;  2UXC R;  5LMN R;  4LF7 R;  4K0K R;  4LF8 R;  3OTO R;  4DR2 R;  4OX9 R;  4LF4 R;  1G1X C;  4JI1 R;  1IBK R;  4JI2 R;  1FJG R;  2UXB R;  4JI4 R;  1IBL R;  4DV3 R;  1HNX R;  4DUZ R;  1XMO R;  4B3T R;  4DR6 R;  5BR8 R;  4JI0 R;  1N32 R;  4DR4 R;  1HNZ R;  2VQE R;  2UUC R;  4DV6 R;  4X66 R;  4DV5 R;  2UU9 R;  4X65 R; 
#chains in the Genus database with same CATH homology
 4JI3 R;  4LF9 R;  4DV7 R;  4LFB R;  4DV1 R;  2F4V R;  4LFC R;  1XNR R;  1HR0 R;  4KHP R;  1J5E R;  2VQF R;  3T1Y R;  2E5L R;  1IBM R;  1FKA R;  4DV0 R;  4NXM R;  4LFA R;  4B3M R;  4DV2 R;  4DV4 R;  4X64 R;  4DR1 R;  4DR3 R;  4DR7 R;  4DUY R;  4JYA R;  2ZM6 R;  4YHH R;  4DR5 R;  2UUB R;  4LF6 R;  2UUA R;  4B3S R;  4JV5 R;  4AQY R;  4JI7 R;  2HHH R;  4X62 R;  4LF5 R;  4YY3 R;  3T1H R;  4NXN R;  2UXD R;  1N33 R;  4B3R R;  4JI5 R;  1N36 R;  4JI6 R;  5LMU R;  1XMQ R;  1XNQ R;  1HNW R;  4GKJ R;  4GKK R;  1I94 R;  4JI8 R;  1N34 R;  2UXC R;  5LMN R;  4LF7 R;  4K0K R;  4LF8 R;  3OTO R;  4DR2 R;  4OX9 R;  4LF4 R;  1G1X C;  4JI1 R;  1IBK R;  4JI2 R;  1FJG R;  2UXB R;  4JI4 R;  1IBL R;  4DV3 R;  1HNX R;  4DUZ R;  1XMO R;  4B3T R;  4DR6 R;  5BR8 R;  4JI0 R;  1N32 R;  4DR4 R;  1HNZ R;  2VQE R;  2UUC R;  4DV6 R;  4X66 R;  4DV5 R;  2UU9 R;  4X65 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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